cluster # 2940

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Schistosoma mansoni
cluster # 2940 cluster # 2940 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2940#0 length = 327 sequences # 1

consensus_2940#1 length = 309 sequences # 1

consensusID : consensus_2940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [TGAGTTTATGTCAATCAAAAGTATAAATAGATCTGACAGTAAATTTTTTAAAAATGCAAAACACTGCTGCTAAATTATATTTCTAAGCCAACTACTTAATTATATTTAACTTTTCTTATCTAATCTTACAGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAGTGAAATAACTGTTGGCAGTGCCATTCAAAATACACATATATTGAATGACAAGGGGATTTGTAAATATGAACCTTTGGAAAACTATCTAGGATCAGATCTTGCATTTTCTGATAGTTTTACCGATTCTATCACATTTCCCGTTTCTTCTTT]

[+] EMBL CD091391             [TGAGTTTATGTCAATCAAAAGTATAAATAGATCTGACAGTAAATTTTTTAAAAATGCAAAACACTGCTGCTAAATTATATTTCTAAGCCAACTACTTAATTATATTTAACTTTTCTTATCTAATCTTACAGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAGTGAAATAACTGTTGGCAGTGCCATTCAAAATACACATATATTGAATGACAAGGGGATTTGTAAATATGAACCTTTGGAAAACTATCTAGGATCAGATCTTGCATTTTCTGATAGTTTTACCGATTCTATCACATTTCCCGTTTCTTCTTT]




>consensus_2940#0
TGAGTTTATGTCAATCAAAAGTATAAATAGATCTGACAGTAAATTTTTTAAAAATGCAAA
ACACTGCTGCTAAATTATATTTCTAAGCCAACTACTTAATTATATTTAACTTTTCTTATC
TAATCTTACAGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAGTGA
AATAACTGTTGGCAGTGCCATTCAAAATACACATATATTGAATGACAAGGGGATTTGTAA
ATATGAACCTTTGGAAAACTATCTAGGATCAGATCTTGCATTTTCTGATAGTTTTACCGA
TTCTATCACATTTCCCGTTTCTTCTTT

consensusID : consensus_2940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [CTGCGTTGCTTTATGGGTTTCCATCGGATCCTTCGTACTTATAGTTAAGCTAGTAATTTGGAGGCTTCATGATCTTTTGGATAAAAGTGACCCTGTTGATAACAGTCAGAATTCCAATAAAGCATACTCAAAGAAACAGCTATCAACTCGGCATCAGACAGGTGTACATGAAGAAGGTCAGGAACATTTTCAGGACATTAATGACATTGAGAACAAGTGCCGAAGGATCGGAATAGCGGGGCTTGAATTGGCTGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAGTGAAATAAC]

[+] EMBL CD068229             [CTGCGTTGCTTTATGGGTTTCCATCGGATCCTTCGTACTTATAGTTAAGCTAGTAATTTGGAGGCTTCATGATCTTTTGGATAAAAGTGACCCTGTTGATAACAGTCAGAATTCCAATAAAGCATACTCAAAGAAACAGCTATCAACTCGGCATCAGACAGGTGTACATGAAGAAGGTCAGGAACATTTTCAGGACATTAATGACATTGAGAACAAGTGCCGAAGGATCGGAATAGCGGGGCTTGAATTGGCTGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAGTGAAATAAC]




>consensus_2940#1
CTGCGTTGCTTTATGGGTTTCCATCGGATCCTTCGTACTTATAGTTAAGCTAGTAATTTG
GAGGCTTCATGATCTTTTGGATAAAAGTGACCCTGTTGATAACAGTCAGAATTCCAATAA
AGCATACTCAAAGAAACAGCTATCAACTCGGCATCAGACAGGTGTACATGAAGAAGGTCA
GGAACATTTTCAGGACATTAATGACATTGAGAACAAGTGCCGAAGGATCGGAATAGCGGG
GCTTGAATTGGCTGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTACTGATAG
TGAAATAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2940#0      -----TGAGTTTATGTCAATCAAAAGTATAAATAGATCTGACAGTAAATTTTTTAAAAAT 55
consensus_2940#1      CTGCGTTGCTTTATGGGTTTCCATCGGATCCTTCGTACTTATAGTTAAGCT---AGTAAT 57
                           *   ******    ** *  * **   * *  ** * *** **  *   *  ***

consensus_2940#0      GCAAAACACTGCTGCTAAATTATATTTCTAAGCCAACTACTTAATTATATTTAACTTTTC 115
consensus_2940#1      TTGGAGGCTTCATGATCTTTTGGATA--AAAGTGACCCTGTTGATAACAGTCAGAATTCC 115
                          *    *  ** *   **  **    ***  * *   ** ** * * * *   ** *

consensus_2940#0      TTATCTAATCTTACAGATTTAAGAGACTCT--ACTTTGAACCATGTTTGTCATTTTACTG 173
consensus_2940#1      --AATAAAGCATACTCAAAGAAACAGCTATCAACTCGGCATCAGACAGGTGTACATGAAG 173
                        *   ** * ***  *   **    ** *  ***  * * **     **     *   *

consensus_2940#0      ATAGT--GAAATAACTGTTGG----CAGTGCCATTCAAAATACACATATATTGAATG--A 225
consensus_2940#1      AAGGTCAGGAACATTTTCAGGACATTAATGACATTGAGAACAAGTGCCGAAGGATCGGAA 233
                      *  **  * ** *  *   **     * ** **** * ** *       *  **  *  *

consensus_2940#0      CAAGGGGATTTGTAAATATGAACCTTTGGAAAACTATCTAGGATCAGATCTTGCATTTT- 284
consensus_2940#1      TAGCGGGGCTTGAATTGGCTGATTTAAGAGACTCTACTTTGAACCATGTTTGTCATTTTA 293
                       *  ***  *** *       *  *  *  *  ***  * * * **  * *  ****** 

consensus_2940#0      CTGATAGTTTTACCGATTCTATCACATTTCCCGTTTCTTCTTT 327
consensus_2940#1      CTGATAGTGAAATAAC--------------------------- 309
                      ********   *