cluster # 2949

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Schistosoma mansoni
cluster # 2949 cluster # 2949 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2949#0 length = 514 sequences # 1

consensus_2949#1 length = 415 sequences # 1

consensusID : consensus_2949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCTTTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTTTATCAATTAAAAATTTCCTCAATTGTTCCATAATCTCTGCAGCTTGACGATGATAATCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAAAAAATTAATCATTGCTTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCAACTTTAAGTTCGTCTTCAGGCAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCGTTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG]

[+] EMBL CD128850             [AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCTTTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTTTATCAATTAAAAATTTCCTCAATTGTTCCATAATCTCTGCAGCTTGACGATGATAATCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAAAAAATTAATCATTGCTTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCAACTTTAAGTTCGTCTTCAGGCAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCGTTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG]




>consensus_2949#0
AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCT
TTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTTAG
TTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATG
TATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTT
TATCAATTAAAAATTTCCTCAATTGTTCCATAATCTCTGCAGCTTGACGATGATAATCAG
CTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAAAAAAT
TAATCATTGCTTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCAACTTTAA
GTTCGTCTTCAGGCAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCGTTTCTTACGAT
CAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG

consensusID : consensus_2949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [TGTTGTATGAGAACCTGGACCATTTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTCTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATAACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAATGAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAAGAAAATAATCAGTCAGCCAATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAGAAAGACAGATATCAGAGTAGTACCAGTAG]

[+] EMBL CD098401             [TGTTGTATGAGAACCTGGACCATTTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTTCTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATAACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAATGAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAAGAAAATAATCAGTCAGCCAATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAGAAAGACAGATATCAGAGTAGTACCAGTAG]




>consensus_2949#1
TGTTGTATGAGAACCTGGACCATTTTTAGTTGGAGTATTTAAAGTACTATTTAATGGACT
TCTACTCCCTGATATATCATGATTTAATGTATCATTTACACGTTTTATTTCATATAATTT
ATGTGGTTTTGACATTGATTCTTCTTTTCTATGGAGATAATAATAATGATAAGGATAGAG
GAAATTTATTACAATTGGGTGCAAAATAACTTTTTATACTACAGCAAATAGAAATTGAAC
TCCCACTTCATCAGGTTAGATTTTAAATGAAAGTAAACTAAGGAGTTATTGTACAATTGG
ACATGAAAGAAAATAATCAGTCAGCCAATAAGCAACGTAGAGCTTAGCATCAGTCATACA
ATAACAACAGAACGAGATTAAATTAGAAAGACAGATATCAGAGTAGTACCAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2949#0      AGCTCACCATCAGAGATTGTTAATTCTGAATCATTTTCTGCTTCAAAATCAAATAGCGCT 60
consensus_2949#1      ------------------------------------------------------------
                                                                                  

consensus_2949#0      TTACAAGATGGTCCTAAAATAGGTGCATTTTTTGTTGTATGAGAACCTGGACCATTTT-A 119
consensus_2949#1      --------------------------------TGTTGTATGAGAACCTGGACCATTTTTA 28
                                                      ************************** *

consensus_2949#0      GTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAAT 179
consensus_2949#1      GTTGGAGTATTTAAAGTACTATTTAATGGACTTCTACTCCCTGATATATCATGATTTAAT 88
                      ************************************************************

consensus_2949#0      GTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTT 239
consensus_2949#1      GTATCATTTACACGTTTTATTTCATATAATTTATGTGGTTTTGACATTGATTCTTCTTTT 148
                      ************************************************************

consensus_2949#0      TTATCAAT-TAAAAATTTCCTCAATTGTTCCATAATCTC--TGCAGCTTGACGATGATAA 296
consensus_2949#1      CTATGGAGATAATAATAATGATAAGGATAGAGGAAATTTATTACAATTGGGTGCAAAATA 208
                       ***  *  *** ***      **   *     **  *   * **  * *  *   *  *

consensus_2949#0      TCAGCTTGTGATGTTGTAAATTCTAATAACGATTGCACTTGATCAGTTTCACTATTCAA- 355
consensus_2949#1      ACTTTTTATACTACAGCAAATAGAAATTGAACTCCCACTTCATCAGGTTAGATTTTAAAT 268
                       *   ** *  *   * ****   ***     *  ***** ***** **   * ** ** 

consensus_2949#0      -AAAATTAATCATTGC-TTGTTCGGCTAATGCTTTTGATTCTTGAAATTTTTCTTCAGCA 413
consensus_2949#1      GAAAGTAAACTAAGGAGTTATTGTACAATTGGACATGAAA--GAAAATAATCAGTCAGCC 326
                       *** * **  *  *  ** **   * * **    ***      ****  *   ***** 

consensus_2949#0      ACTT--TAAGTTCGTCTTCAGG--CAATCTTGAATTGTTTGCACTTCGATCCTGCTTTCG 469
consensus_2949#1      AATAAGCAACGTAGAGCTTAGCATCAGTCATACAATAACAACAGAACGAGATTAAATTAG 386
                      * *    **  * *   * **   ** ** *  * *     **   ***   *   ** *

consensus_2949#0      TTTCTTACGATCAAAGTCTAATCTTCGTCCTTCGAGTTTCTTACG 514
consensus_2949#1      AAAGACA-GATATCAGAGTAGTACCAGTAG--------------- 415
                            * ***   **  ** *    **