cluster # 297

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Schistosoma mansoni
cluster # 297 cluster # 297 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_297#0 length = 267 sequences # 1

consensus_297#1 length = 212 sequences # 1

consensusID : consensus_297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAA]

[+] EMBL CD059766             [GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATTGCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACACATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAA]




>consensus_297#0
GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATT
GCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACAC
ATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCC
CTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTC
ACCGTCTATCGCTCCATTCCACAACAA

consensusID : consensus_297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [GTACATCGCCTCCATTATTCATGTCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT]

[+] EMBL CD166519             [GTACATCGCCTCCATTATTCATGTCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT]




>consensus_297#1
GTACATCGCCTCCATTATTCATGTCTCCTTCACTCTACAACTGTACAATACTTCCCTCAG
TCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTCACCGT
CTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATCAATTG
ACGTAAATGTTTGTTGATCTTTTATTCTCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_297#0      GTATACACACACTCATCATTGTCCATACTCAAAGTTGGATCTGGTAGTGTTCATCATATT 60
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      GCACCAATCACTCTCTATCACTCAGTCAAACACACAAATAAACACAACAACAAATAACAC 120
consensus_297#1      ------------------------------------------------------------
                                                                                 

consensus_297#0      ATATCCTTCACTTACCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCC 180
consensus_297#1      --GTACATCGCCT-CCATTATTCAT--GTCTCCTTCACTCTACAACTGTACAATACTTCC 55
                        * * ** * * ***********    *******************************

consensus_297#0      CTCAGTCATTCCTTCCTCCAGTGTTTTATTCACTGCTTCGTGTCTGATCTCTCAGTCGTC 240
consensus_297#1      CTCAGTCATTCCTTCCTCCAGTGTTTTATAAACTGCTTCGTGTCTGATCTCTCAGTCGTC 115
                     *****************************  *****************************

consensus_297#0      ACCGTCTATCGCTCCATTCCACAACAA--------------------------------- 267
consensus_297#1      ACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCTGCGAAAACAGTGCCCAATCATC 175
                     ***************************                                 

consensus_297#0      -------------------------------------
consensus_297#1      AATTGACGTAAATGTTTGTTGATCTTTTATTCTCGCT 212