cluster # 2981

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Schistosoma mansoni
cluster # 2981 cluster # 2981 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2981#0 length = 128 sequences # 1

consensus_2981#1 length = 104 sequences # 1

consensusID : consensus_2981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence

                              [TTAGGGTTCTACTTAATGATAGGCAAGCTAAAAATATATTTCAGGAACAACTGGAAAAACAATTAGGCAGCCATGTAAGTTGTGCCCACCCCAAGTGCAGCGTGNGAATGACATCCAGAAAAGCTGTG]

[+] EMBL CD068374             [TTAGGGTTCTACTTAATGATAGGCAAGCTAAAAATATATTTCAGGAACAACTGGAAAAACAATTAGGCAGCCATGTAAGTTGTGCCCACCCCAAGTGCAGCGTGNGAATGACATCCAGAAAAGCTGTG]




>consensus_2981#0
TTAGGGTTCTACTTAATGATAGGCAAGCTAAAAATATATTTCAGGAACAACTGGAAAAAC
AATTAGGCAGCCATGTAAGTTGTGCCCACCCCAAGTGCAGCGTGNGAATGACATCCAGAA
AAGCTGTG

consensusID : consensus_2981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 104
fasta sequence

                              [CAACTTACATGTCTTCCTAACTGTTTTTCTAGTTGTTCCTGAAACATATTCTTAGCTTGCCTATCATTAAGTAGAACCCTAAGAAGCTTTCTTGCCCAGTCTTT]

[+] EMBL CD087464             [CAACTTACATGTCTTCCTAACTGTTTTTCTAGTTGTTCCTGAAACATATTCTTAGCTTGCCTATCATTAAGTAGAACCCTAAGAAGCTTTCTTGCCCAGTCTTT]




>consensus_2981#1
CAACTTACATGTCTTCCTAACTGTTTTTCTAGTTGTTCCTGAAACATATTCTTAGCTTGC
CTATCATTAAGTAGAACCCTAAGAAGCTTTCTTGCCCAGTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2981#0      TTAGGGTTCTACTTAATGATAGGCAAGCTAAAAATATATTTCAGGAACAACTGGAAAAAC 60
consensus_2981#1      ---------------------------CAACTTACATGTCTTCCTAACTGTTTTTCTAGT 33
                                                 * *   * ** * *    ***   *     *  

consensus_2981#0      AATTAGGCAGCCATGTAAGTTG--TGCCCACC-CCAAGTGCAGCGTGNGAATGACATCCA 117
consensus_2981#1      TGTTCCTGAAACATATTCTTAGCTTGCCTATCATTAAGTAGAACCCTAAGAAGCTTTCTT 93
                        **    *  *** *   * *  **** * *   ****  * *      * *   **  

consensus_2981#0      GAAAAGCTGTG 128
consensus_2981#1      GCCCAGTCTTT 104
                      *   **   *