These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCATCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTTATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGTCCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGGACGTTCATATTCAG] [+] EMBL CD163000 [TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCATCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTTATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGTCCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGGACGTTCATATTCAG] consensusID : consensus_2983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TCTGGCCGCGATCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCTCCAGGACATTGAAGTATTTCAAGGGGGGTGTAC] [-] EMBL CD111256 [TCTGGCCGCGATCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTTTGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCCGTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCACCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTTTTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATCTTCTCCAGGACATTGAAGTATTTCAAGGGGGGTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2983#0 TGTGTGCGTGGATATACATATACGAACCAAGAGATGGCTTCGTTTCGATTCTTGCCGCCA 60 consensus_2983#1 -------------------------------------------------TCTGGCCGCGA 11 *** ***** * consensus_2983#0 TCGGATGGTTTTGGTTTAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTT 120 consensus_2983#1 TCGGATGGTTTTGGTTCAACGAGTTCTTTTGGAGTTCGCGGTGGAAACAAACACCACCTT 71 **************** ******************************************* consensus_2983#0 TTATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCC 180 consensus_2983#1 TGATATCCTTTTACTAGTGCATTCCAAGCACTAGTTCCGAGAGGATCAATATGTATACCC 131 * ********************************************************** consensus_2983#0 GTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCA 240 consensus_2983#1 GTGCCAGAACGTGGTGGACCCATTACAAACCATCTATAAGGAGGTCGCGTTTTCTCCCCA 191 ************************************************************ consensus_2983#0 CCCAGAGAAAATAAATCCTCTTTGAAATACCGACATATCGTATAATCATTCAATAACTTT 300 consensus_2983#1 CCCAGAGAAAATAAATCCTCCTTGAAATACCGACATATCGTATAATCATTCAATAACTTT 251 ******************** *************************************** consensus_2983#0 TTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATC 360 consensus_2983#1 TTACGCCTTGAATGTTGCTTCTCCATAATTTGCATCAAATATATACAACGGACTATCATC 311 ************************************************************ consensus_2983#0 TTCGTTTTCTTTCATATATCGAATGAAATACTTCATTTTTAGTTTAACAGAACAACCTTT 420 consensus_2983#1 TTC------TCCAGGACAT----TGAAGTATTTCAAGGGGGGTGTAC------------- 348 *** * * ** **** ** **** ** ** consensus_2983#0 ATCATCTTCACCACATTTGAACCTCTCATTGTGATATTTTTTATCCAAAAGCTTTAGTGT 480 consensus_2983#1 ------------------------------------------------------------ consensus_2983#0 CCAATTTTCATTAGCTTTCCAATTTATTTGAGCATTTTGAATCACGACAGGTTGGTAAGG 540 consensus_2983#1 ------------------------------------------------------------ consensus_2983#0 ACGTTCATATTCAG 554 consensus_2983#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||