cluster # 299

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Schistosoma mansoni
cluster # 299 cluster # 299 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_299#0 length = 452 sequences # 1

consensus_299#1 length = 339 sequences # 1

consensusID : consensus_299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [TGTTAAAACATGTAAATGTACCCTTGGTTGAGAATAAAGTTTTAAACTAGTCAGTAGATAGGAAAGTAAAAATGGGATGTTTTACCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAACATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTAAACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGATATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGGATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAGCTAGTACTGCCTTGTGGCAAGGGAGTTCTT]

[+] EMBL CD138166             [TGTTAAAACATGTAAATGTACCCTTGGTTGAGAATAAAGTTTTAAACTAGTCAGTAGATAGGAAAGTAAAAATGGGATGTTTTACCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAACATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTAAACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGATATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGGATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAGCTAGTACTGCCTTGTGGCAAGGGAGTTCTT]




>consensus_299#0
TGTTAAAACATGTAAATGTACCCTTGGTTGAGAATAAAGTTTTAAACTAGTCAGTAGATA
GGAAAGTAAAAATGGGATGTTTTACCTGGAGAAATTTTCTACAGCCAATTTATGCGATGA
TTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGT
AACATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAG
TAAACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAG
ATATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCG
GGATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGC
AGCTAGTACTGCCTTGTGGCAAGGGAGTTCTT

consensusID : consensus_299#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGGTACATCTAAGTCATCTGAAGAGATATATGAAATGACAGTCGAAATAGGCAAATTGGTCCATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAACATCTNAATGACTCTTCATAAATTCACACAATATTTGATAGCTATTGGATAGTCNAAGTAACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA]

[+] EMBL CD166086             [TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGGTACATCTAAGTCATCTGAAGAGATATATGAAATGACAGTCGAAATAGGCAAATTGGTCCATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAACATCTNAATGACTCTTCATAAATTCACACAATATTTGATAGCTATTGGATAGTCNAAGTAACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA]




>consensus_299#1
TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGG
TACATCTAAGTCATCTGAAGAGATATATGAAATGACAGTCGAAATAGGCAAATTGGTCCA
TTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTG
AGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAAC
ATCTNAATGACTCTTCATAAATTCACACAATATTTGATAGCTATTGGATAGTCNAAGTAA
CTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_299#0      ------------------------------------------TGTTAAAACATGTAAATG 18
consensus_299#1      TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGG 60
                                                               *   **    *   ** *

consensus_299#0      TACCCTTGGTTGA---GAATAAAGTTTTAAACTAGTCAGT--AGATAGGAAAGTAAA--- 70
consensus_299#1      TACATCTAAGTCATCTGAAGAGATATATGAAAT-GACAGTCGAAATAGGCAAATTGGTCC 119
                     ***   *   * *   *** * *  * * ** * * ****  * ***** ** *      

consensus_299#0      ----AATGGGATGTTTTAC----CTGGAGAAATTTTCTACAGCCAATTTATGCGATGATT 122
consensus_299#1      ATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATT 179
                           * *  * * ***     *************************************

consensus_299#0      GAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAA 182
consensus_299#1      GAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAA 239
                     ************************************************ ***********

consensus_299#0      CATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTA 242
consensus_299#1      CATCTNAATGACTCTTCATAAATTCA-CACAATATTTGATAGCTATTGGATAGTCNAAGT 298
                     ***** ***************** ** **************************** *   

consensus_299#0      AACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGAT 302
consensus_299#1      AACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA------------------- 339
                     ************  ***************************                   

consensus_299#0      ATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGG 362
consensus_299#1      ------------------------------------------------------------
                                                                                 

consensus_299#0      ATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAG 422
consensus_299#1      ------------------------------------------------------------
                                                                                 

consensus_299#0      CTAGTACTGCCTTGTGGCAAGGGAGTTCTT 452
consensus_299#1      ------------------------------