These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [TGTTAAAACATGTAAATGTACCCTTGGTTGAGAATAAAGTTTTAAACTAGTCAGTAGATAGGAAAGTAAAAATGGGATGTTTTACCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAACATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTAAACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGATATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGGATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAGCTAGTACTGCCTTGTGGCAAGGGAGTTCTT] [+] EMBL CD138166 [TGTTAAAACATGTAAATGTACCCTTGGTTGAGAATAAAGTTTTAAACTAGTCAGTAGATAGGAAAGTAAAAATGGGATGTTTTACCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAACATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTAAACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGATATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGGATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAGCTAGTACTGCCTTGTGGCAAGGGAGTTCTT] consensusID : consensus_299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGGTACATCTAAGTCATCTGAAGAGATATATGAAATGACAGTCGAAATAGGCAAATTGGTCCATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAACATCTNAATGACTCTTCATAAATTCACACAATATTTGATAGCTATTGGATAGTCNAAGTAACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA] [+] EMBL CD166086 [TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGGTACATCTAAGTCATCTGAAGAGATATATGAAATGACAGTCGAAATAGGCAAATTGGTCCATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATTGAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAACATCTNAATGACTCTTCATAAATTCACACAATATTTGATAGCTATTGGATAGTCNAAGTAACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_299#0 ------------------------------------------TGTTAAAACATGTAAATG 18 consensus_299#1 TGTTTCAGAAGACTGGTCGACCCAATTAATACAAGCATCCCATACAAATTGTTCCGAAGG 60 * ** * ** * consensus_299#0 TACCCTTGGTTGA---GAATAAAGTTTTAAACTAGTCAGT--AGATAGGAAAGTAAA--- 70 consensus_299#1 TACATCTAAGTCATCTGAAGAGATATATGAAAT-GACAGTCGAAATAGGCAAATTGGTCC 119 *** * * * *** * * * * ** * * **** * ***** ** * consensus_299#0 ----AATGGGATGTTTTAC----CTGGAGAAATTTTCTACAGCCAATTTATGCGATGATT 122 consensus_299#1 ATTCGTTAGATTCTCTTAGTAAGCTGGAGAAATTTTCTACAGCCAATTTATGCGATGATT 179 * * * * *** ************************************* consensus_299#0 GAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTAAACAATTTGTAA 182 consensus_299#1 GAGCTAAATCGGTAATATTATGCATTTCAGCTAATGCCTCGATACCTANACAATTTGTAA 239 ************************************************ *********** consensus_299#0 CATCTAAATGACTCTTCATAAATCCAACACAATATTTGATAGCTATTGGATAGTCAAGTA 242 consensus_299#1 CATCTNAATGACTCTTCATAAATTCA-CACAATATTTGATAGCTATTGGATAGTCNAAGT 298 ***** ***************** ** **************************** * consensus_299#0 AACTAGCAGCAAGAAATATATCTTGCACAGTGGCTTCTGTAATTTCTAAGCAACCAAGAT 302 consensus_299#1 AACTAGCAGCAAAGAATATATCTTGCACAGTGGCTTCTGTA------------------- 339 ************ *************************** consensus_299#0 ATGCAAAATCAAGCAGACGACGAAGAGCCCAAGGAGAAATATAATCTAACTTGACTCGGG 362 consensus_299#1 ------------------------------------------------------------ consensus_299#0 ATGATTGTTGTTCTTTATATGGTGATGAAAACATGGCTAAGAAATATGCTGAACTAGCAG 422 consensus_299#1 ------------------------------------------------------------ consensus_299#0 CTAGTACTGCCTTGTGGCAAGGGAGTTCTT 452 consensus_299#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||