cluster # 2992

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2992 cluster # 2992 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2992#0 length = 456 sequences # 1

consensus_2992#1 length = 203 sequences # 1

consensusID : consensus_2992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [GTAGGAATCATCATTGTTATTGTGTTCAATATGGTTGATAATAGTACAACACCAGAAAGAGGAAAAGTAGAAGTATTCACTTGCGTACATACATAAGTTTTATGGAACATAATTTTCATTAGAAGATTACTCTTGACGAAAAGAGGATTTCTGACATTGGCATACATATACACACATACATAAATATATATCTATATGTATGAATAAAACAGGCAAAATGCATCAAAATTAACTAAGAAATGAAGAAGAGAAATTGGAATTCAAAAAGAATATATATGAAGAATGGAGATGATTACAATGTGAAGAATTAGCTGAACTGTATTATAGGAAGAAGAACCGGAGGTAAAGGTTGGACAATCACGAAATGGTAATAAGGAAGAGACAAGCGGACAGTTCAGAACATAACAATCATCATTACTATTAATATACAAAAAGTTTGGTTATTACTCCTCGGTG]

[+] EMBL AI976337             [GTAGGAATCATCATTGTTATTGTGTTCAATATGGTTGATAATAGTACAACACCAGAAAGAGGAAAAGTAGAAGTATTCACTTGCGTACATACATAAGTTTTATGGAACATAATTTTCATTAGAAGATTACTCTTGACGAAAAGAGGATTTCTGACATTGGCATACATATACACACATACATAAATATATATCTATATGTATGAATAAAACAGGCAAAATGCATCAAAATTAACTAAGAAATGAAGAAGAGAAATTGGAATTCAAAAAGAATATATATGAAGAATGGAGATGATTACAATGTGAAGAATTAGCTGAACTGTATTATAGGAAGAAGAACCGGAGGTAAAGGTTGGACAATCACGAAATGGTAATAAGGAAGAGACAAGCGGACAGTTCAGAACATAACAATCATCATTACTATTAATATACAAAAAGTTTGGTTATTACTCCTCGGTG]




>consensus_2992#0
GTAGGAATCATCATTGTTATTGTGTTCAATATGGTTGATAATAGTACAACACCAGAAAGA
GGAAAAGTAGAAGTATTCACTTGCGTACATACATAAGTTTTATGGAACATAATTTTCATT
AGAAGATTACTCTTGACGAAAAGAGGATTTCTGACATTGGCATACATATACACACATACA
TAAATATATATCTATATGTATGAATAAAACAGGCAAAATGCATCAAAATTAACTAAGAAA
TGAAGAAGAGAAATTGGAATTCAAAAAGAATATATATGAAGAATGGAGATGATTACAATG
TGAAGAATTAGCTGAACTGTATTATAGGAAGAAGAACCGGAGGTAAAGGTTGGACAATCA
CGAAATGGTAATAAGGAAGAGACAAGCGGACAGTTCAGAACATAACAATCATCATTACTA
TTAATATACAAAAAGTTTGGTTATTACTCCTCGGTG

consensusID : consensus_2992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [ATTCAAAAAGAATATTATGAAGAATGGAGATGATTACAATGTGGAGAATTAGATGAACTGTACTATAAGAAGAAGAAGAAGAAGAACCGGAGGTAAAGGTTGGACAATCACAAAATGGTAATAAAGAAGAGACAAGCTGACAGTTTAGAACATAACAATCATTATTACTATTAATATACAAAAAAGTTTGGTTATTACTCCTC]

[+] EMBL CD111419             [ATTCAAAAAGAATATTATGAAGAATGGAGATGATTACAATGTGGAGAATTAGATGAACTGTACTATAAGAAGAAGAAGAAGAAGAACCGGAGGTAAAGGTTGGACAATCACAAAATGGTAATAAAGAAGAGACAAGCTGACAGTTTAGAACATAACAATCATTATTACTATTAATATACAAAAAAGTTTGGTTATTACTCCTC]




>consensus_2992#1
ATTCAAAAAGAATATTATGAAGAATGGAGATGATTACAATGTGGAGAATTAGATGAACTG
TACTATAAGAAGAAGAAGAAGAAGAACCGGAGGTAAAGGTTGGACAATCACAAAATGGTA
ATAAAGAAGAGACAAGCTGACAGTTTAGAACATAACAATCATTATTACTATTAATATACA
AAAAAGTTTGGTTATTACTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2992#0      GTAGGAATCATCATTGTTATTGTGTTCAATATGGTTGATAATAGTACAACACCAGAAAGA 60
consensus_2992#1      ------------------------------------------------------------
                                                                                  

consensus_2992#0      GGAAAAGTAGAAGTATTCACTTGCGTACATACATAAGTTTTATGGAACATAATTTTCATT 120
consensus_2992#1      ------------------------------------------------------------
                                                                                  

consensus_2992#0      AGAAGATTACTCTTGACGAAAAGAGGATTTCTGACATTGGCATACATATACACACATACA 180
consensus_2992#1      ------------------------------------------------------------
                                                                                  

consensus_2992#0      TAAATATATATCTATATGTATGAATAAAACAGGCAAAATGCATCAAAATTAACTAAGAAA 240
consensus_2992#1      ------------------------------------------------------------
                                                                                  

consensus_2992#0      TGAAGAAGAGAAATTGGAATTCAAAAAGAATATATATGAAGAATGGAGATGATTACAATG 300
consensus_2992#1      ------------------ATTCAAAAAGAATAT-TATGAAGAATGGAGATGATTACAATG 41
                                        *************** **************************

consensus_2992#0      TGAAGAATTAGCTGAACTGTATTATAGGAAGAAGAA---------CCGGAGGTAAAGGTT 351
consensus_2992#1      TGGAGAATTAGATGAACTGTACTATAAGAAGAAGAAGAAGAAGAACCGGAGGTAAAGGTT 101
                      ** ******** ********* **** *********         ***************

consensus_2992#0      GGACAATCACGAAATGGTAATAAGGAAGAGACAAGCGGACAGTTCAGAACATAACAATCA 411
consensus_2992#1      GGACAATCACAAAATGGTAATAAAGAAGAGACAAGCTGACAGTTTAGAACATAACAATCA 161
                      ********** ************ ************ ******* ***************

consensus_2992#0      TCATTACTATTAATATACAAAAA-GTTTGGTTATTACTCCTCGGTG 456
consensus_2992#1      TTATTACTATTAATATACAAAAAAGTTTGGTTATTACTCCTC---- 203
                      * ********************* ******************