cluster # 3001

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Schistosoma mansoni
cluster # 3001 cluster # 3001 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3001#0 length = 360 sequences # 1

consensus_3001#1 length = 117 sequences # 1

consensusID : consensus_3001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [TTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAACGTGTTGAAGAAAATCAACAAGCAGCTGCGGCTGCTGCTCATTGTCACCATTCTACTCATCATCCAACTACCTCTACAATGTCGGTTCCTGTATCGACATTATCGACTATATCCATGAATCAAACACCTAAAGTTTACAACGAACAAAATATTTTGCCTGGGATGGCTTCACCTCATAATAGGCGATCATACAGTGGTCAACGTCGTTCACTTCTTGTTACTGTAAGTACATGTTCTCCATCAAAAACTAATACTTCGTCTAGATCTGCGAAGTTAGTAAGTCCTAACGCACATATGTCTGGCCATCCTGTTGCGACGTGCAG]

[+] EMBL CD169794             [TTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAACGTGTTGAAGAAAATCAACAAGCAGCTGCGGCTGCTGCTCATTGTCACCATTCTACTCATCATCCAACTACCTCTACAATGTCGGTTCCTGTATCGACATTATCGACTATATCCATGAATCAAACACCTAAAGTTTACAACGAACAAAATATTTTGCCTGGGATGGCTTCACCTCATAATAGGCGATCATACAGTGGTCAACGTCGTTCACTTCTTGTTACTGTAAGTACATGTTCTCCATCAAAAACTAATACTTCGTCTAGATCTGCGAAGTTAGTAAGTCCTAACGCACATATGTCTGGCCATCCTGTTGCGACGTGCAG]




>consensus_3001#0
TTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAACGTGTTGAAGAAAATCAACAAGC
AGCTGCGGCTGCTGCTCATTGTCACCATTCTACTCATCATCCAACTACCTCTACAATGTC
GGTTCCTGTATCGACATTATCGACTATATCCATGAATCAAACACCTAAAGTTTACAACGA
ACAAAATATTTTGCCTGGGATGGCTTCACCTCATAATAGGCGATCATACAGTGGTCAACG
TCGTTCACTTCTTGTTACTGTAAGTACATGTTCTCCATCAAAAACTAATACTTCGTCTAG
ATCTGCGAAGTTAGTAAGTCCTAACGCACATATGTCTGGCCATCCTGTTGCGACGTGCAG

consensusID : consensus_3001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [TCAGGAACTAGAGGAGAATTAATTAATTTAGGAAATGTACATACTGAACTGAAAGAGACTGAAGTACATGATATCACACGTTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAA]

[+] EMBL CD068459             [TCAGGAACTAGAGGAGAATTAATTAATTTAGGAAATGTACATACTGAACTGAAAGAGACTGAAGTACATGATATCACACGTTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAA]




>consensus_3001#1
TCAGGAACTAGAGGAGAATTAATTAATTTAGGAAATGTACATACTGAACTGAAAGAGACT
GAAGTACATGATATCACACGTTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3001#0      TTATGTTCAAAGTGTTATTGAACGAGTTAAGGC--TGAACGTGTTGAAGAAAATCAACAA 58
consensus_3001#1      TCAGGAACTAGAGGAGAATTAATTAATTTAGGAAATGTACATACTGAACTGAAAGAGACT 60
                      * * *  * *   *  * * **  * ** ***   ** ** *  ****   **  *    

consensus_3001#0      GCAGCTGCGGCTGCTGCTCATTGTCACCATTCTACTCATCATCCAACTACCTCTACAATG 118
consensus_3001#1      GAAGTACATGATATCACACGTTATGTTCAAAGTGTTATTGAACGAGTTAAGGCTGAA--- 117
                      * **     * *    * * ** *   **   *  *  * * * *  **   **  *   

consensus_3001#0      TCGGTTCCTGTATCGACATTATCGACTATATCCATGAATCAAACACCTAAAGTTTACAAC 178
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      GAACAAAATATTTTGCCTGGGATGGCTTCACCTCATAATAGGCGATCATACAGTGGTCAA 238
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      CGTCGTTCACTTCTTGTTACTGTAAGTACATGTTCTCCATCAAAAACTAATACTTCGTCT 298
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      AGATCTGCGAAGTTAGTAAGTCCTAACGCACATATGTCTGGCCATCCTGTTGCGACGTGC 358
consensus_3001#1      ------------------------------------------------------------
                                                                                  

consensus_3001#0      AG 360
consensus_3001#1      --