cluster # 3015

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Schistosoma mansoni
cluster # 3015 cluster # 3015 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3015#0 length = 348 sequences # 1

consensus_3015#1 length = 245 sequences # 1

consensusID : consensus_3015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TGTCCGAAGGCGTTCTACTACTAACGTCTCGATTTCTGATATACTTAGTTCAACATCTACTTCACTGTCTGTTCCTGGAAGAGTAATTACTCCGTTTTCTCACTTTTTACGTTCTGTCACTAACCCACTGGGATCAGATGATAGTTCAAGTGTCGATACTTCTGTAATCTCTAGTAGACGTAAGTCCAGGAAAACGACTGTCCAAAAGGAATCAGATGTTATTGTCGTCACCACAAACTCTGAAACGTCAGTATATGTTTCTAGGCCTGTTTCTTCAGTTCCTACTCAGCTTACAAGTAGGTACAGGAGATTGAAAGGGTGATCTCTTTTTACAACTCTTGGCGTCCT]

[+] EMBL CD181283             [TGTCCGAAGGCGTTCTACTACTAACGTCTCGATTTCTGATATACTTAGTTCAACATCTACTTCACTGTCTGTTCCTGGAAGAGTAATTACTCCGTTTTCTCACTTTTTACGTTCTGTCACTAACCCACTGGGATCAGATGATAGTTCAAGTGTCGATACTTCTGTAATCTCTAGTAGACGTAAGTCCAGGAAAACGACTGTCCAAAAGGAATCAGATGTTATTGTCGTCACCACAAACTCTGAAACGTCAGTATATGTTTCTAGGCCTGTTTCTTCAGTTCCTACTCAGCTTACAAGTAGGTACAGGAGATTGAAAGGGTGATCTCTTTTTACAACTCTTGGCGTCCT]




>consensus_3015#0
TGTCCGAAGGCGTTCTACTACTAACGTCTCGATTTCTGATATACTTAGTTCAACATCTAC
TTCACTGTCTGTTCCTGGAAGAGTAATTACTCCGTTTTCTCACTTTTTACGTTCTGTCAC
TAACCCACTGGGATCAGATGATAGTTCAAGTGTCGATACTTCTGTAATCTCTAGTAGACG
TAAGTCCAGGAAAACGACTGTCCAAAAGGAATCAGATGTTATTGTCGTCACCACAAACTC
TGAAACGTCAGTATATGTTTCTAGGCCTGTTTCTTCAGTTCCTACTCAGCTTACAAGTAG
GTACAGGAGATTGAAAGGGTGATCTCTTTTTACAACTCTTGGCGTCCT

consensusID : consensus_3015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [AGTAACTCTTCCAGGAACCGACAGAGAAGGGCATGTTGATCTACGTATATCAGATCTCGAGACGTTAGTAGTAGAACGCCTTCGGACACTACGACAATCAGTTTTCTTGGCAGCAAAGGCATTAGGATTTTCAACTGAGTGTAAGTTAGATACATTCGGTTTTTCAATTCCACTTCGAGTCATCGAAGGTAAAATTTCTGAACTACGTTGCAATAAGCTACGTAATCCTCTTTGAAGTGAACTAG]

[+] EMBL CD111804             [AGTAACTCTTCCAGGAACCGACAGAGAAGGGCATGTTGATCTACGTATATCAGATCTCGAGACGTTAGTAGTAGAACGCCTTCGGACACTACGACAATCAGTTTTCTTGGCAGCAAAGGCATTAGGATTTTCAACTGAGTGTAAGTTAGATACATTCGGTTTTTCAATTCCACTTCGAGTCATCGAAGGTAAAATTTCTGAACTACGTTGCAATAAGCTACGTAATCCTCTTTGAAGTGAACTAG]




>consensus_3015#1
AGTAACTCTTCCAGGAACCGACAGAGAAGGGCATGTTGATCTACGTATATCAGATCTCGA
GACGTTAGTAGTAGAACGCCTTCGGACACTACGACAATCAGTTTTCTTGGCAGCAAAGGC
ATTAGGATTTTCAACTGAGTGTAAGTTAGATACATTCGGTTTTTCAATTCCACTTCGAGT
CATCGAAGGTAAAATTTCTGAACTACGTTGCAATAAGCTACGTAATCCTCTTTGAAGTGA
ACTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3015#0      TGTCCGAAGGCGTTCTACTACTAACGTCTCGATTTCTGATATACTTAGTTCAACATCTAC 60
consensus_3015#1      ------------------------------------------------------------
                                                                                  

consensus_3015#0      TTCACTGTCTGTTCCTGGAAGAGTAATTACTCCGTTTTCTCACTTTTTACGTTCTGTCAC 120
consensus_3015#1      ---AGTAACTCTTCCAGGAACCGACAGAGAAGGGCATGTTGA---TCTACGTA-TATCA- 52
                         * *  ** **** ****  *  *       *  *  * *   * *****  * *** 

consensus_3015#0      TAACCCACTGGGATCAGATGATAGTTCAAGTGTCGATACTTCTGTAATC---TCTAGTAG 177
consensus_3015#1      -GATCTCGAGACGTTAG-TAGTAGAACGCCTTCGGACACTACGACAATCAGTTTTCTTGG 110
                        * *    *   * ** *  ***  *   *   ** *** *   ****   * *  * *

consensus_3015#0      ACGTAAGTCCAGGAAAACGACTGTCCAAAAGGAA-TCAGATGTTATTGTCGTCACCACAA 236
consensus_3015#1      CAGCAAAGGCATTAGGATTTTCAACTGAGTGTAAGTTAGATACATTCGGTTTTTCAATTC 170
                        * **   **  *  *       *  *  * ** * ****    * *   *  * *   

consensus_3015#0      -ACTCTGAAACGTC-AGTATATGTTTCTAGGCCTGTTTCTTCAGTTCCTACTCAGCTTAC 294
consensus_3015#1      CACTTCGAGTCATCGAAGGTAAAATTTCTGAACTACGTTGCAATAAGCTACGTAATCCTC 230
                       ***  **  * ** *   **   **   *  **   *    *    ****  *     *

consensus_3015#0      AAGTAGGTACAGGAGATTGAAAGGGTGATCTCTTTTTACAACTCTTGGCGTCCT 348
consensus_3015#1      TTTGAAGTGAACTAG--------------------------------------- 245
                          * **  *  **