cluster # 302

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Schistosoma mansoni
cluster # 302 cluster # 302 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_302#0 length = 443 sequences # 1

consensus_302#1 length = 352 sequences # 1

consensusID : consensus_302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TAGAATCTCGTAGACGATTACAAGTAGAAGCCATCGAACGCCGATTAGCTGAAAGTGAATCACGTGGGATTGGAGATTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAGAAAAGAAACAGTATGGTGATACATCGGATAATACATTACGATGGAATGTCAGTTAATTGGACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCATGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACAATATTTTGTCGAATAATGATTTTTATTCGGGGCTTTTTTTGAGAATATATACATACTTTCATTATTTATCAATAAATCAACTTTTTACTAATTGGATTGGCCAACTTATTGAAATTTTCACATCGGCTATAATTCGTGTCTTG]

[+] EMBL CD138173             [TAGAATCTCGTAGACGATTACAAGTAGAAGCCATCGAACGCCGATTAGCTGAAAGTGAATCACGTGGGATTGGAGATTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAGAAAAGAAACAGTATGGTGATACATCGGATAATACATTACGATGGAATGTCAGTTAATTGGACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCATGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACAATATTTTGTCGAATAATGATTTTTATTCGGGGCTTTTTTTGAGAATATATACATACTTTCATTATTTATCAATAAATCAACTTTTTACTAATTGGATTGGCCAACTTATTGAAATTTTCACATCGGCTATAATTCGTGTCTTG]




>consensus_302#0
TAGAATCTCGTAGACGATTACAAGTAGAAGCCATCGAACGCCGATTAGCTGAAAGTGAAT
CACGTGGGATTGGAGATTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAG
AAAAGAAACAGTATGGTGATACATCGGATAATACATTACGATGGAATGTCAGTTAATTGG
ACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCA
TGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACA
ATATTTTGTCGAATAATGATTTTTATTCGGGGCTTTTTTTGAGAATATATACATACTTTC
ATTATTTATCAATAAATCAACTTTTTACTAATTGGATTGGCCAACTTATTGAAATTTTCA
CATCGGCTATAATTCGTGTCTTG

consensusID : consensus_302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [ACGCCGATTAGCTGAAAGTGAATCACGTGGGATTGGAGTTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAGAAAAGAAACAGTATGGTGCTACATCGGATACTACATTACGATGGAATGTCAGTTAATTGGACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCATGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACAATATTTTGTCGAATAATGATTTTTATTCAGGGCTTTTTTTGAGAATATATACATACTTTCATTATTTNTCAATAAAAAAAAAAAAAAAAA]

[-] EMBL AI395456             [ACGCCGATTAGCTGAAAGTGAATCACGTGGGATTGGAGTTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAGAAAAGAAACAGTATGGTGCTACATCGGATACTACATTACGATGGAATGTCAGTTAATTGGACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCATGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACAATATTTTGTCGAATAATGATTTTTATTCAGGGCTTTTTTTGAGAATATATACATACTTTCATTATTTNTCAATAAAAAAAAAAAAAAAAA]




>consensus_302#1
ACGCCGATTAGCTGAAAGTGAATCACGTGGGATTGGAGTTTTGAAAAGGTTAGAAGAAAA
CAAGAACGTATGGAAGAGTTAGAAAAGAAACAGTATGGTGCTACATCGGATACTACATTA
CGATGGAATGTCAGTTAATTGGACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTT
AATTCTTGTAAGTAGGTCATCATGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCA
TTATTGTTTATGCTGTATAACAATATTTTGTCGAATAATGATTTTTATTCAGGGCTTTTT
TTGAGAATATATACATACTTTCATTATTTNTCAATAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_302#0      TAGAATCTCGTAGACGATTACAAGTAGAAGCCATCGAACGCCGATTAGCTGAAAGTGAAT 60
consensus_302#1      -------------------------------------ACGCCGATTAGCTGAAAGTGAAT 23
                                                          ***********************

consensus_302#0      CACGTGGGATTGGAGATTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAG 120
consensus_302#1      CACGTGGGATTGGAG-TTTTGAAAAGGTTAGAAGAAAACAAGAACGTATGGAAGAGTTAG 82
                     *************** ********************************************

consensus_302#0      AAAAGAAACAGTATGGTGATACATCGGATAATACATTACGATGGAATGTCAGTTAATTGG 180
consensus_302#1      AAAAGAAACAGTATGGTGCTACATCGGATACTACATTACGATGGAATGTCAGTTAATTGG 142
                     ****************** *********** *****************************

consensus_302#0      ACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCA 240
consensus_302#1      ACTGTATAAAAATATATTGTTCACTTCGTTTCTTTCTTAATTCTTGTAAGTAGGTCATCA 202
                     ************************************************************

consensus_302#0      TGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACA 300
consensus_302#1      TGTTTTACTCTTCTAAAATTTTTACTGAAGTACATTCATTATTGTTTATGCTGTATAACA 262
                     ************************************************************

consensus_302#0      ATATTTTGTCGAATAATGATTTTTATTCGGGGCTTTTTTTGAGAATATATACATACTTTC 360
consensus_302#1      ATATTTTGTCGAATAATGATTTTTATTCAGGGCTTTTTTTGAGAATATATACATACTTTC 322
                     **************************** *******************************

consensus_302#0      ATTATTTATCAATAAATCAACTTTTTACTAATTGGATTGGCCAACTTATTGAAATTTTCA 420
consensus_302#1      ATTATTTNTCAATAAAAAAAAAAAAAAAAA------------------------------ 352
                     ******* ********  **      *  *                              

consensus_302#0      CATCGGCTATAATTCGTGTCTTG 443
consensus_302#1      -----------------------