cluster # 3021

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Schistosoma mansoni
cluster # 3021 cluster # 3021 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3021#0 length = 516 sequences # 1

consensus_3021#1 length = 177 sequences # 1

consensusID : consensus_3021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [GAAGTAAACACTGTGTTCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGCTTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTATGCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAGCAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAATAGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAATCTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAACCCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTAGCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT]

[+] EMBL CD068558             [GAAGTAAACACTGTGTTCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGCTTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTATGCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAGCAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAATAGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAATCTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAACCCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTAGCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT]




>consensus_3021#0
GAAGTAAACACTGTGTTCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGCTTC
TATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTATGCT
ACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAA
GTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAGCAA
AAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAATAGG
CTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAATCTC
AGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAACCCC
TAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTAGCT
CTGGCTAACAGGATTCCTAATGAGACAATTAATATT

consensusID : consensus_3021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTAAGTGAAAAAGCTAGAGCTTCTATTTAGGACCTTGTGATTCTAGAACACACATCCTTTCTGCCTGGCTATGCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGAT]

[+] EMBL CD068555             [CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTAAGTGAAAAAGCTAGAGCTTCTATTTAGGACCTTGTGATTCTAGAACACACATCCTTTCTGCCTGGCTATGCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGAT]




>consensus_3021#1
CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTAAGTGAAAAAGCTAGAGCTTC
TATTTAGGACCTTGTGATTCTAGAACACACATCCTTTCTGCCTGGCTATGCTACCTTTCA
CTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAACAAAGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3021#0      --GAAGTAAACACTGTGT-TCTGTGAAGGATCATACAGTAGGAGTGAAAAAGGCTAGAGC 57
consensus_3021#1      CAGAAGTTACTACAATGTGTTTTTCAAAGATCATACAGTA--AGTGAAAAAG-CTAGAGC 57
                        ***** *  **  *** * * * ** ************  ********** *******

consensus_3021#0      TTCTATTTAGGATCCTATGTGATTCTAGAGACACGACGATCGCTTTCTCGCCTGGTCTAT 117
consensus_3021#1      TTCTATTTAGGACCT--TGTGATTCTAGA-ACAC----ACATCCTTTCTGCCTGG-CTAT 109
                      ************ *   ************ ****    *   * **   ****** ****

consensus_3021#0      GCTACCTTACACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAAC 177
consensus_3021#1      GCTACCTTTCACTGAGATGGACTAGGAGAACAAGACACTTATAACACAGATCCAGCTAAC 169
                      ******** ***************************************************

consensus_3021#0      AAAGTGATAATTTAAAGCAAACATCACACAGCAGAAAACAAAGAAAAATAGAAAGTGCAG 237
consensus_3021#1      AAAGTGAT---------------------------------------------------- 177
                      ********                                                    

consensus_3021#0      CAAAAGAGCTGGGGATAAACATAGCAAGATAGCAGAGAATGCATCCAAATGAAACATAAT 297
consensus_3021#1      ------------------------------------------------------------
                                                                                  

consensus_3021#0      AGGCTTCGTCTTTATCATCAAACATTTTGTCATCATATAAGTATAATTCATTTGAGGAAT 357
consensus_3021#1      ------------------------------------------------------------
                                                                                  

consensus_3021#0      CTCAGTGTTGTGCAAAAATGTAGAATATTATAATCAACTTAGGAATTATCGTAATAAAAC 417
consensus_3021#1      ------------------------------------------------------------
                                                                                  

consensus_3021#0      CCCTAGGAAAAATTACAATTAACTTGAGTCAATTAGATTTCTCAAGGATCCTTGACTCTA 477
consensus_3021#1      ------------------------------------------------------------
                                                                                  

consensus_3021#0      GCTCTGGCTAACAGGATTCCTAATGAGACAATTAATATT 516
consensus_3021#1      ---------------------------------------