cluster # 3026

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Schistosoma mansoni
cluster # 3026 cluster # 3026 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3026#0 length = 272 sequences # 1

consensus_3026#1 length = 226 sequences # 1

consensusID : consensus_3026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [CATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTACTTTTCAGCATGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTCAAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCAATCACATAATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCACAATAACATATTTAGTACTTTTTCATCTGCACTA]

[+] EMBL CD119675             [CATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTACTTTTCAGCATGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTCAAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCAATCACATAATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCACAATAACATATTTAGTACTTTTTCATCTGCACTA]




>consensus_3026#0
CATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTACTTTTCAGCAT
GCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTCA
AGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCAATCACATAA
TGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCACA
ATAACATATTTAGTACTTTTTCATCTGCACTA

consensusID : consensus_3026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCCCGTCTCATCATTGCAGTCATTTACTTTCAGCATATGAGTATCCTGATCATTGCTTTCAATGCATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTTTTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCACTAACGTGCCAC]

[+] EMBL CD112090             [TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCCCGTCTCATCATTGCAGTCATTTACTTTCAGCATATGAGTATCCTGATCATTGCTTTCAATGCATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTTTTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCACTAACGTGCCAC]




>consensus_3026#1
TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCCCGTCTCATCATTGCAGTCA
TTTACTTTCAGCATATGAGTATCCTGATCATTGCTTTCAATGCATTCGCCAGCTTTTCCA
CACCAAATACATGTTGTATCCAATGGTGTTGCTTTTCGGCATGCTTCCTTCGTTGTGTGT
ATCGAACACAATGTTCTGATGACTTCAAACTCCACTAACGTGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3026#0      CATTCGCCAGCTTTTCCACACCAAATACATGT-TGTATCCAATGGTGTTACTTTTCAGCA 59
consensus_3026#1      -------------------TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCC 41
                                          * *  *   * * ****  * * *   * ** * * *** 

consensus_3026#0      TGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTC 119
consensus_3026#1      CG-TCTCATCATTGCAGTCATTTACTTTCAGCATAT--GAGTATCCTGATCATTGCTTTC 98
                       * *  * **  **     **  *     *   * *   * **    * * ***   ***

consensus_3026#0      AAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCA-ATCACAT 178
consensus_3026#1      AATGCATTCGCCA----GCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTT 154
                      **   **    **    *    ****     ** * **     ** ** *    *  * *

consensus_3026#0      AATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCA 238
consensus_3026#1      TTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCA 214
                         ** *      ** *    **  ***   *  *****      *  * *** *** **

consensus_3026#0      CAATAACATATTTAGTACTTTTTCATCTGCACTA 272
consensus_3026#1      C--TAACGTGCCAC-------------------- 226
                      *  **** *