These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATTTGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAATGACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTAACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTACTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAAAGAACTCATCAAACTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGATGCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAGAATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG] [+] EMBL CD112357 [ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATTTGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAATGACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTAACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTACTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAAAGAACTCATCAAACTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGATGCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAGAATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG] consensusID : consensus_3042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [GGTAGTAACACGCTCGGAAGTAACGCAATTATTTACAGCTCAATATAAAATCTCGTCAGTTGATTTCAACAATATTTGATTTGTAGCTCAGGTGGATGATTTTGATGGAGCTCTGAAAACAAGAATCCACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAATACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA] [+] EMBL CD165261 [GGTAGTAACACGCTCGGAAGTAACGCAATTATTTACAGCTCAATATAAAATCTCGTCAGTTGATTTCAACAATATTTGATTTGTAGCTCAGGTGGATGATTTTGATGGAGCTCTGAAAACAAGAATCCACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAATACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3042#0 ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATT 60 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 TGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAAT 120 consensus_3042#1 ------------------------------------------GGTAGTAACACGCTCGG- 17 ** ** consensus_3042#0 GACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTA 180 consensus_3042#1 AAGTAACGCAATTATTTACAGCTCAATATAA--AATCTCGTCAGTTGATTTCAACAAT-- 73 * ** * ** * * ***** ** *** *** * ***** *** ** * consensus_3042#0 ACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTA 240 consensus_3042#1 ATTTGAT-TTGT--AGCTCAGGTGG-ATGATTTTG-ATGGAGCTCTGAA-AACAAGAATC 127 * ** **** * *** ** ****** ** ***** * ** ** * consensus_3042#0 CTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAA 300 consensus_3042#1 CACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAAT 187 * ** ** * ** ** *** * * * * * * * ** * * consensus_3042#0 AGAACTCATCAAA-CTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGAT 359 consensus_3042#1 ACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA----------------- 230 * * ** * ** * ** ***** ***** ** consensus_3042#0 GCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAG 419 consensus_3042#1 ------------------------------------------------------------ consensus_3042#0 AATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG 461 consensus_3042#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||