cluster # 3042

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Schistosoma mansoni
cluster # 3042 cluster # 3042 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3042#0 length = 461 sequences # 1

consensus_3042#1 length = 230 sequences # 1

consensusID : consensus_3042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATTTGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAATGACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTAACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTACTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAAAGAACTCATCAAACTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGATGCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAGAATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG]

[+] EMBL CD112357             [ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATTTGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAATGACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTAACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTACTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAAAGAACTCATCAAACTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGATGCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAGAATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG]




>consensus_3042#0
ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATT
TGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAAT
GACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTA
ACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTA
CTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAA
AGAACTCATCAAACTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGATG
CTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAGA
ATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG

consensusID : consensus_3042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [GGTAGTAACACGCTCGGAAGTAACGCAATTATTTACAGCTCAATATAAAATCTCGTCAGTTGATTTCAACAATATTTGATTTGTAGCTCAGGTGGATGATTTTGATGGAGCTCTGAAAACAAGAATCCACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAATACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA]

[+] EMBL CD165261             [GGTAGTAACACGCTCGGAAGTAACGCAATTATTTACAGCTCAATATAAAATCTCGTCAGTTGATTTCAACAATATTTGATTTGTAGCTCAGGTGGATGATTTTGATGGAGCTCTGAAAACAAGAATCCACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAATACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA]




>consensus_3042#1
GGTAGTAACACGCTCGGAAGTAACGCAATTATTTACAGCTCAATATAAAATCTCGTCAGT
TGATTTCAACAATATTTGATTTGTAGCTCAGGTGGATGATTTTGATGGAGCTCTGAAAAC
AAGAATCCACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGT
TGAGAATACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3042#0      ATTGATTACCTTCGGCTTCATATTTTCTTAAATTTCTAGTAATTTTACTGATATAAGATT 60
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      TGCAAGCACTAACGGCATCATCCAATGATAAACCACGATGACCAAGCAAATGTGCCAAAT 120
consensus_3042#1      ------------------------------------------GGTAGTAACACGCTCGG- 17
                                                                      **   **     

consensus_3042#0      GACTAGCTAAACAAAATTCAGCTTTATCTAAATAATTGTCCCGATTGATATCAGCAGTTA 180
consensus_3042#1      AAGTAACGCAATTATTTACAGCTCAATATAA--AATCTCGTCAGTTGATTTCAACAAT-- 73
                       * ** *  **  *  * *****  ** ***  ***     *  ***** *** ** *  

consensus_3042#0      ACCAAATATTGTCGAAATCAACTGACGAGATTTTATATTGAGCTGTAAATAATTGCGTTA 240
consensus_3042#1      ATTTGAT-TTGT--AGCTCAGGTGG-ATGATTTTG-ATGGAGCTCTGAA-AACAAGAATC 127
                      *    ** ****  *  ***  **    ******  ** ***** * ** **      * 

consensus_3042#0      CTTCCGAGCGTGTTACTACCAAATGGCAATTAGTAACGCTACCGATGTCTTTCGAAATAA 300
consensus_3042#1      CACCCAAGTTTATTTCTGGTAAACAGAAGGATATTCAGTGAAGAAAATTTTGTTGAGAAT 187
                      *  ** **  * ** **   ***  * *     *   *  *   *  * **    *  * 

consensus_3042#0      AGAACTCATCAAA-CTGTGATGCGTATTCAGCTTCTCTCTTTGATTGTAATGCGAATGAT 359
consensus_3042#1      ACCTGTTATGAGTTCTCTTATTACGTCCCAGCTGCTCTCATTA----------------- 230
                      *    * ** *   ** * **       ***** ***** **                  

consensus_3042#0      GCTAACCATTTTTCTTTACGCTTCTCATTTCGATTACAATAAGTGTTATTATATTGTGAG 419
consensus_3042#1      ------------------------------------------------------------
                                                                                  

consensus_3042#0      AATGGGAATGAAGAGCTACGACAGTGTGGTACTCTCCATTTG 461
consensus_3042#1      ------------------------------------------