These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CTTAATGATAGGATCGTTTAGAGGGTCATGATATTCCTTAGGAGTATGAAGGATGTATTTTCTGTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGCTAGGTCAAACAATAAGGTG] [+] EMBL CD113500 [CTTAATGATAGGATCGTTTAGAGGGTCATGATATTCCTTAGGAGTATGAAGGATGTATTTTCTGTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGCTAGGTCAAACAATAAGGTG] consensusID : consensus_3068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTCAAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTACCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAGACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGTTCAAT] [+] EMBL CD178873 [CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTCAAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTACCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAGACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGTTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3068#0 --------CTTAATGATAGGATC-GTTTAGAGGGTCATGAT-ATTCCTTAGGAGTA-TGA 49 consensus_3068#1 CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTC 60 ** * *** ** ** **** * * *** *** * * consensus_3068#0 AGGATGTATTTTCT-----GTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTA 104 consensus_3068#1 AAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTA-CCAAGGCGAAAATATTA 119 * ****** * ** **** ** * * * * **************** consensus_3068#0 GTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACAT 164 consensus_3068#1 GTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAG-ACAT 178 ********************************************** ** **** **** consensus_3068#0 ATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAAC 224 consensus_3068#1 ATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAAC 238 ************************************************************ consensus_3068#0 GCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCA 284 consensus_3068#1 GCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCA 298 ************************************************************ consensus_3068#0 GTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGG 344 consensus_3068#1 GTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGG 358 ************************************************************ consensus_3068#0 TTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGC 404 consensus_3068#1 TTATGAAGTCAGGAACCATACACCAGTTCAAT---------------------------- 390 ************************** ***** consensus_3068#0 TAGGTCAAACAATAAGGTG 423 consensus_3068#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||