cluster # 3068

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Schistosoma mansoni
cluster # 3068 cluster # 3068 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3068#0 length = 423 sequences # 1

consensus_3068#1 length = 390 sequences # 1

consensusID : consensus_3068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [CTTAATGATAGGATCGTTTAGAGGGTCATGATATTCCTTAGGAGTATGAAGGATGTATTTTCTGTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGCTAGGTCAAACAATAAGGTG]

[+] EMBL CD113500             [CTTAATGATAGGATCGTTTAGAGGGTCATGATATTCCTTAGGAGTATGAAGGATGTATTTTCTGTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGCTAGGTCAAACAATAAGGTG]




>consensus_3068#0
CTTAATGATAGGATCGTTTAGAGGGTCATGATATTCCTTAGGAGTATGAAGGATGTATTT
TCTGTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTAGTGAAGCAATGCTCAA
GTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACATATTACATGGAGCTCAC
TCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCA
TGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTG
ATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAAC
CATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGCTAGGTCAAACAATAAG
GTG

consensusID : consensus_3068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTCAAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTACCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAGACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGTTCAAT]

[+] EMBL CD178873             [CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTCAAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTACCAAGGCGAAAATATTAGTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAGACATATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTTATGAAGTCAGGAACCATACACCAGTTCAAT]




>consensus_3068#1
CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTC
AAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTACCAAGGCGAAAATATTAG
TGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAGACATAT
TACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAACGC
AAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCAGT
AGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGGTT
ATGAAGTCAGGAACCATACACCAGTTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3068#0      --------CTTAATGATAGGATC-GTTTAGAGGGTCATGAT-ATTCCTTAGGAGTA-TGA 49
consensus_3068#1      CTGTACTGTATACCACTGAAATCAGTCTATAGGGAAACAGTGATTGGTTAAATAAACTTC 60
                                **    *   *** ** ** ****  *   * ***  ***     * *  

consensus_3068#0      AGGATGTATTTTCT-----GTACTGTATACCACGTGAAATCAGTCAAGGCGAAAATATTA 104
consensus_3068#1      AAACCGTATTTCATTGAAAAAACCTTATATAACAAGTACTTA-CCAAGGCGAAAATATTA 119
                      *    ******  *       **  ****  **  * * * *  ****************

consensus_3068#0      GTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCCCATACTATTACAT 164
consensus_3068#1      GTGAAGCAATGCTCAAGTGAAGCATCATTAGGCCCTGTCGACTGGCTCAAACTAG-ACAT 178
                      ********************************************** ** ****  ****

consensus_3068#0      ATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAAC 224
consensus_3068#1      ATTACATGGAGCTCACTCCATTGCTACATTACTATTTCTAACTAACCACCTAAACTAAAC 238
                      ************************************************************

consensus_3068#0      GCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCA 284
consensus_3068#1      GCAAAATATTCCGCCATGCAGACAGGTATCGCATTACTTCCTGAGACACTCAAACAATCA 298
                      ************************************************************

consensus_3068#0      GTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGG 344
consensus_3068#1      GTAGGCTAATATGTTGATTATTCTTGAGTCATAATCAGGCTAATAGGAAAGTACTATCGG 358
                      ************************************************************

consensus_3068#0      TTATGAAGTCAGGAACCATACACCAGCTCAATCATTATGTGCAAGATTGTTCATTGGTGC 404
consensus_3068#1      TTATGAAGTCAGGAACCATACACCAGTTCAAT---------------------------- 390
                      ************************** *****                            

consensus_3068#0      TAGGTCAAACAATAAGGTG 423
consensus_3068#1      -------------------