cluster # 3069

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Schistosoma mansoni
cluster # 3069 cluster # 3069 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3069#0 length = 550 sequences # 1

consensus_3069#1 length = 210 sequences # 1

consensusID : consensus_3069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [ACTTTGATGAATCTCTGTCAATGACAATGAGCTACAAAAGCCAAGCAAGAATTTGTACATTAAAGTTTTCAAACATATGGGTGGATATTTAGGTGTACATCAATAAAAGCATGCACATGACTGAGGAAATATCAACGAAAGAATGTTTTAGCACTGCCAGAAAGCACAAAATTTAGTTATTTTGACTGGAAAAGTTTATTCACATGTTTGAGTTGCATCGTTACACATAAAACACATGAACATAAGTTCTTCAAGAAGTAATAATTATTAGCCGGTGAATGTAAAACGAAGTGTAAGAGATAAGACAACGATGAATATCTATGCTGTTTATTATTGCGAATAAGATTCAATATCATGTAATTGTGCACGTGCGTTTTTTTGTTTTGAAATCTGTAGCTATTCTAGCAGCAGTTTCAAATACATCATTGACGCCTTCTTTTTGCTTAGCTGAACATTCAATATATGCCTGTGCACCTATATTTTTCGCCACGCTCCTTCCCTCGGATTCTGTCACAGGTTTTTGTTTCATCCTTTGAAGTTCTCTTTTTGT]

[+] EMBL CD135225             [ACTTTGATGAATCTCTGTCAATGACAATGAGCTACAAAAGCCAAGCAAGAATTTGTACATTAAAGTTTTCAAACATATGGGTGGATATTTAGGTGTACATCAATAAAAGCATGCACATGACTGAGGAAATATCAACGAAAGAATGTTTTAGCACTGCCAGAAAGCACAAAATTTAGTTATTTTGACTGGAAAAGTTTATTCACATGTTTGAGTTGCATCGTTACACATAAAACACATGAACATAAGTTCTTCAAGAAGTAATAATTATTAGCCGGTGAATGTAAAACGAAGTGTAAGAGATAAGACAACGATGAATATCTATGCTGTTTATTATTGCGAATAAGATTCAATATCATGTAATTGTGCACGTGCGTTTTTTTGTTTTGAAATCTGTAGCTATTCTAGCAGCAGTTTCAAATACATCATTGACGCCTTCTTTTTGCTTAGCTGAACATTCAATATATGCCTGTGCACCTATATTTTTCGCCACGCTCCTTCCCTCGGATTCTGTCACAGGTTTTTGTTTCATCCTTTGAAGTTCTCTTTTTGT]




>consensus_3069#0
ACTTTGATGAATCTCTGTCAATGACAATGAGCTACAAAAGCCAAGCAAGAATTTGTACAT
TAAAGTTTTCAAACATATGGGTGGATATTTAGGTGTACATCAATAAAAGCATGCACATGA
CTGAGGAAATATCAACGAAAGAATGTTTTAGCACTGCCAGAAAGCACAAAATTTAGTTAT
TTTGACTGGAAAAGTTTATTCACATGTTTGAGTTGCATCGTTACACATAAAACACATGAA
CATAAGTTCTTCAAGAAGTAATAATTATTAGCCGGTGAATGTAAAACGAAGTGTAAGAGA
TAAGACAACGATGAATATCTATGCTGTTTATTATTGCGAATAAGATTCAATATCATGTAA
TTGTGCACGTGCGTTTTTTTGTTTTGAAATCTGTAGCTATTCTAGCAGCAGTTTCAAATA
CATCATTGACGCCTTCTTTTTGCTTAGCTGAACATTCAATATATGCCTGTGCACCTATAT
TTTTCGCCACGCTCCTTCCCTCGGATTCTGTCACAGGTTTTTGTTTCATCCTTTGAAGTT
CTCTTTTTGT

consensusID : consensus_3069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [CTAGTTTATATGTTCCGACGATTTTCGAAAGTTTTGTTTCAGAGATGCAGATTAATAATAAGCGTGTTGAACTTAATTTGTGGGATACAGCCGGGCAAGAAGATTATGACCGATTACGTCCACTTTCTTATCCTGACACAAATGTCGTCGTGCTTTGTTTCAGTGTAGACAATCCTGACAGTTTGGACAATATCAGCACGAAGTGGATGC]

[+] EMBL CD113517             [CTAGTTTATATGTTCCGACGATTTTCGAAAGTTTTGTTTCAGAGATGCAGATTAATAATAAGCGTGTTGAACTTAATTTGTGGGATACAGCCGGGCAAGAAGATTATGACCGATTACGTCCACTTTCTTATCCTGACACAAATGTCGTCGTGCTTTGTTTCAGTGTAGACAATCCTGACAGTTTGGACAATATCAGCACGAAGTGGATGC]




>consensus_3069#1
CTAGTTTATATGTTCCGACGATTTTCGAAAGTTTTGTTTCAGAGATGCAGATTAATAATA
AGCGTGTTGAACTTAATTTGTGGGATACAGCCGGGCAAGAAGATTATGACCGATTACGTC
CACTTTCTTATCCTGACACAAATGTCGTCGTGCTTTGTTTCAGTGTAGACAATCCTGACA
GTTTGGACAATATCAGCACGAAGTGGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3069#0      ACTTTGATGAATCTCTGTCAATGACAATGAGCTACAAAAGCCAAGCAAGAATTTGTACAT 60
consensus_3069#1      ------------------------------------------------------------
                                                                                  

consensus_3069#0      TAAAGTTTTCAAACATATGGGTGGATATTTAGGTGTACATCAATAAAAGCATGCACATGA 120
consensus_3069#1      ------------------------------------------------------------
                                                                                  

consensus_3069#0      CTGAGGAAATATCAACGAAAGAATGTTTTAGCACTGCCAGAAAGCACAAAATTTAGTTAT 180
consensus_3069#1      ------------------------------------------------------------
                                                                                  

consensus_3069#0      TTTGACTGGAAAAGTTTATTCACATGTTTGAGTTGCATCGTTACACATAAAACACATGAA 240
consensus_3069#1      ---------------------------CTAGTTTATAT-GTTCCG---ACGATTTTCGAA 29
                                                  *   **  ** *** *    *  *     ***

consensus_3069#0      CATAAGTTCTTCAAGAAGTAATAATTATTAGCCGGTGAATGTAAAACGAAGTGTAAGAGA 300
consensus_3069#1      AGTT--TTGTTTCAGAGATGCAGATTAATAATAAGCG--TGTTGAACTTAATTTGTGGGA 85
                        *   ** **  ***  *    **** **    * *  ***  ***  * * *  * **

consensus_3069#0      TAAGACAACGATGAATATCTATGCTGTTTATTATTGCGAATAAGATTCAATATCATGTAA 360
consensus_3069#1      TACAGCCGGGCAAGAAGATTATG--ACCGATTACGTCCACTTT--CTTATCCTGACACAA 141
                      **   *   *    *    ****      ****   * * *     * *   * *   **

consensus_3069#0      TTGTGCACGTGCGTTTTTTTGTTTTGAAATCTGTAGCTATTCTAGCAGCAGTTTCAAATA 420
consensus_3069#1      ATGTCGTCGTGCTTTGTTTCAGTGTAGACAATCCTGACAGTTTGG--ACAATATCAG-CA 198
                       ***   ***** ** ***   * *  *   *   *  * * * *   ** * ***   *

consensus_3069#0      CATCATTGACGCCTTCTTTTTGCTTAGCTGAACATTCAATATATGCCTGTGCACCTATAT 480
consensus_3069#1      CGAAGTGGATGC------------------------------------------------ 210
                      *    * ** **                                                

consensus_3069#0      TTTTCGCCACGCTCCTTCCCTCGGATTCTGTCACAGGTTTTTGTTTCATCCTTTGAAGTT 540
consensus_3069#1      ------------------------------------------------------------
                                                                                  

consensus_3069#0      CTCTTTTTGT 550
consensus_3069#1      ----------