These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGAAATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACAAGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTAGTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATTCTAAATCCTTTAGGTTCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCCTTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTATCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCGCTGTTCAGGTAGGGGGTTCCACTCAGTAATGAAATCAGAATCCCATCCTGAGTCCTTTCCGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC] [+] EMBL CD185770 [CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGAAATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACAAGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTAGTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATTCTAAATCCTTTAGGTTCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCCTTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTATCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCGCTGTTCAGGTAGGGGGTTCCACTCAGTAATGAAATCAGAATCCCATCCTGAGTCCTTTCCGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC] consensusID : consensus_3096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AGCATAGAGGAAGTGCCTGTACCCATGGTATGGTCTCACAAGGAATAACATAGACCCTCTGTCCTTACTACACAAATCTGGATCCTATGACGTCTTGGCATCTGGGACAAAAAATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAGACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCTTCGCTTTAGAAAGATTAATAGTGAAACATTAATTGCGGAAGGCAGCTCAAGATATAACGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACGATAGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA] [+] EMBL CD114151 [AGCATAGAGGAAGTGCCTGTACCCATGGTATGGTCTCACAAGGAATAACATAGACCCTCTGTCCTTACTACACAAATCTGGATCCTATGACGTCTTGGCATCTGGGACAAAAAATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAGACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCTTCGCTTTAGAAAGATTAATAGTGAAACATTAATTGCGGAAGGCAGCTCAAGATATAACGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACGATAGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3096#0 CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGA 60 consensus_3096#1 ----------------------------------------------------AGCATAGA 8 ** ** consensus_3096#0 AATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACA 120 consensus_3096#1 GGAAGTGCCTGTACCCATGGTATG---GTCTCACAAGGAATAACATAGACCCTCT----- 60 * * *** * ** ** * * * * * ** * *** * consensus_3096#0 AGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTA 180 consensus_3096#1 -GTCCTTACTACACAAATCTGGATCCTA-TGACGTCTTG------GCATCTGGGACAAAA 112 * *** ** * ** * ** ** * * *** ** * * * ** * consensus_3096#0 GTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATT---CTAAATCCTTTAGGT 237 consensus_3096#1 AATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAG 172 ** ** * * * ** * ** ** * ** ** ** * * * consensus_3096#0 TCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCC 297 consensus_3096#1 ACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCT 232 ** * * * ** * ** *** * *** * ** * *** * * consensus_3096#0 TTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTA 357 consensus_3096#1 TCGCTTTA--GAAAGATTAATAGTGAAACATTAATTGCGGAA-GGCAGCTCAAGATATAA 289 * * * * ** ** * ** * * * * * * * * consensus_3096#0 TCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCG 417 consensus_3096#1 CGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACG 349 * * ** ** * * * *** * * * * ** ** * * ** consensus_3096#0 CTGTTCAGGTAGGGGGTTCCACTCAGTA-ATGAAATCAGAATCCCATCCTGAGTCCTTTC 476 consensus_3096#1 AT----AGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA-------- 397 * ** ** * ** ** * * ** ** ** * ** ** * *** * consensus_3096#0 CGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC 519 consensus_3096#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||