cluster # 3096

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Schistosoma mansoni
cluster # 3096 cluster # 3096 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3096#0 length = 519 sequences # 1

consensus_3096#1 length = 397 sequences # 1

consensusID : consensus_3096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGAAATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACAAGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTAGTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATTCTAAATCCTTTAGGTTCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCCTTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTATCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCGCTGTTCAGGTAGGGGGTTCCACTCAGTAATGAAATCAGAATCCCATCCTGAGTCCTTTCCGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC]

[+] EMBL CD185770             [CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGAAATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACAAGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTAGTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATTCTAAATCCTTTAGGTTCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCCTTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTATCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCGCTGTTCAGGTAGGGGGTTCCACTCAGTAATGAAATCAGAATCCCATCCTGAGTCCTTTCCGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC]




>consensus_3096#0
CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGA
AATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACA
AGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTA
GTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATTCTAAATCCTTTAGGTTCA
ACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCCTTG
TGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTATCC
CCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCGCTG
TTCAGGTAGGGGGTTCCACTCAGTAATGAAATCAGAATCCCATCCTGAGTCCTTTCCGTT
GCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC

consensusID : consensus_3096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [AGCATAGAGGAAGTGCCTGTACCCATGGTATGGTCTCACAAGGAATAACATAGACCCTCTGTCCTTACTACACAAATCTGGATCCTATGACGTCTTGGCATCTGGGACAAAAAATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAGACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCTTCGCTTTAGAAAGATTAATAGTGAAACATTAATTGCGGAAGGCAGCTCAAGATATAACGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACGATAGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA]

[+] EMBL CD114151             [AGCATAGAGGAAGTGCCTGTACCCATGGTATGGTCTCACAAGGAATAACATAGACCCTCTGTCCTTACTACACAAATCTGGATCCTATGACGTCTTGGCATCTGGGACAAAAAATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAGACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCTTCGCTTTAGAAAGATTAATAGTGAAACATTAATTGCGGAAGGCAGCTCAAGATATAACGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACGATAGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA]




>consensus_3096#1
AGCATAGAGGAAGTGCCTGTACCCATGGTATGGTCTCACAAGGAATAACATAGACCCTCT
GTCCTTACTACACAAATCTGGATCCTATGACGTCTTGGCATCTGGGACAAAAAATTTGGA
ACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAGACATTGGT
GGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCTTCGCTTTA
GAAAGATTAATAGTGAAACATTAATTGCGGAAGGCAGCTCAAGATATAACGCGCGAAATA
TACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACGATAGATAAAAG
ATTACAGTGAATACATTTAACCGCAAACCAACCCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3096#0      CAGGGTAAAATGGTCTAGCTTTCCAAGCTGCTATTTGTATGGTAAACCCCGGAGTTCTGA 60
consensus_3096#1      ----------------------------------------------------AGCATAGA 8
                                                                          **    **

consensus_3096#0      AATTGCACGGGTAGCTGCCGTCTGTATATTTTATAGGATATCTGAGTCACCTTTCCAACA 120
consensus_3096#1      GGAAGTGCCTGTACCCATGGTATG---GTCTCACAAGGAATAACATAGACCCTCT----- 60
                          *  *  *** *    ** **    * * * * *  **   *   *** *       

consensus_3096#0      AGCGCTTGCTGCCTGAACTCAGTTCTTACTAAGGTCGTGTATACTGTAGTGAGCACGGTA 180
consensus_3096#1      -GTCCTTACTACACAAATCTGGATCCTA-TGACGTCTTG------GCATCTGGGACAAAA 112
                       *  *** ** *   **    * ** ** * * *** **      * *    * **   *

consensus_3096#0      GTTTCTGACTTTGCGAACTTCCGTCTTAAAACCCATAGGATT---CTAAATCCTTTAGGT 237
consensus_3096#1      AATTTGGAACTGCAATTATACTGTTTGAATACGTAGAGAATAGGGCTGACATAATAAAAG 172
                        **  **  *       * * ** * ** **  * ** **    ** *     * *   

consensus_3096#0      TCAACCATCCGTTAGCAGGCCGTGGTCTTAAGATCATGGCTCACTGTCACCCCAAGATCC 297
consensus_3096#1      ACATTGGTGGATATATGGCCCTTAAAAATACATTCAGAGACCACAGGCATCGCAAAACCT 232
                       **    *   *     * ** *     **   ***  *  *** * ** * *** * * 

consensus_3096#0      TTGTGAGACCATACCATGGGTACAGGCACTTCCTCTATGCTTTACCTATTTACCTTTCTA 357
consensus_3096#1      TCGCTTTA--GAAAGATTAATAGTGAAACATTAATTGCGGAA-GGCAGCTCAAGATATAA 289
                      * *    *    *  **   **  *  ** *    *  *      *   * *   *   *

consensus_3096#0      TCCCCAAAGTACATTTAAATACAACCTCTCTTCCAGAGCTCATTGATTTTATCGATACCG 417
consensus_3096#1      CGCGCGAAATATACTCACATAGCATGAAACATGATAGTATTTGAGACAATACTAAAAACG 349
                        * * ** ** * * * ***  *     * *       *    **   **   * * **

consensus_3096#0      CTGTTCAGGTAGGGGGTTCCACTCAGTA-ATGAAATCAGAATCCCATCCTGAGTCCTTTC 476
consensus_3096#1      AT----AGATAAAAGATTACAGTGAATACATTTAACCGCAAACCAACCCTTA-------- 397
                       *    ** **   * ** ** * * ** **  ** *  ** ** * *** *        

consensus_3096#0      CGTTGCAGCTTATGAACCTTTACCGATTGCCACTGGGCTGTTC 519
consensus_3096#1      -------------------------------------------