cluster # 3104

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Schistosoma mansoni
cluster # 3104 cluster # 3104 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3104#0 length = 281 sequences # 1

consensus_3104#1 length = 217 sequences # 1

consensusID : consensus_3104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT]

[+] EMBL CD119378             [ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAATCACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGGCTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGGAAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACCTGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT]




>consensus_3104#0
ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAAT
CACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGG
CTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGG
AAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACC
TGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT

consensusID : consensus_3104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC]

[+] EMBL CD114200             [TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCACGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAGTAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC]




>consensus_3104#1
TTTAATAGATTCCAATCAAAAATAAAATCATAAGTAAATCCTTCACGTTGAAATAAACCA
CGAAACAAATTTCTTAAATAAGAATAATTCGGTTCGTTATCAAAACGCATCCCACGACAG
TAATTAAGGTAGACAGCCATTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTT
TGCATTTTCTTTTCGCTAATACGTTCATATTTTTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3104#0      ATATTATGTCTATTATTTACTCTATAACTCCAGAACAAGCTCGTCGAGATGATATGGAAT 60
consensus_3104#1      -------------------TTTAATAGATTCCAATCAAA---AATAAAATCATAAGTAAA 38
                                          *  ***  * *  * ***        * ** *** * ** 

consensus_3104#0      CACTTGGTTATGTGTTAATGTATTTCTTACGTGGTAGTCTTCCATGGCAAGGCTTAAAGG 120
consensus_3104#1      TCCTT-----CACGTTGAAATAAACC--ACGAAACAAATTTCTTAAATAAGAAT------ 85
                        ***        *** *  **   *  ***    *   ***      ***  *      

consensus_3104#0      CTGGTTCCATTCGTCAAAAATATGAACGTATTAGCGAAGAGAAAATGCAAACACCCGTGG 180
consensus_3104#1      --AATTCGGTTCGTTATCAAAACGCATCCCACGAC-AGTAATTAAGGTAGACAGCCA--- 139
                          ***  ***** *  ** * * *        * *  *   ** * * *** **    

consensus_3104#0      AAGTTTTATGTGAAGGTTATCCAGGTACATTATTTAGAAGTTGCTTTTTTTTAATTCACC 240
consensus_3104#1      ---TTTCAACTGGATAACCTTCACATAAAACTTCCACGGGTGTTTGCATTTTCTTTTCGC 196
                         *** *  ** *     * **  ** *   *  *   **   *   ****  **   *

consensus_3104#0      TGTCTGAATAAGTTCATATTTTAATTGTTAAAAAGATTAGT 281
consensus_3104#1      T-----AATACGTTCATATTTTTGAC--------------- 217
                      *     **** ***********