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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3115 cluster # 3115       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3115#0 length = 629 sequences # 1  
consensus_3115#1 length = 621 sequences # 1  

consensusID : consensus_3115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA]

[+] EMBL CD114345             [ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTCCTCAAAAATACATA]


>consensus_3115#0 ATTTTGATTTTTTCGAAGTTGAAAGATTTTCGCTTTTTCTTTTTAAGAAAACTGTTCATA TTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTC TAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATT TGATATAGGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATA TGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGA TACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAAT TGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAA CAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTT ACAGTCCACATTACCAACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGG ACTAGTTCTTGTCAAAACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAA TAATAATGCCGATTCCTCAAAAATACATA



consensusID : consensus_3115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT]

[+] EMBL CD178242             [TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCTACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAGTAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACAAGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACTAGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACAAGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGCCCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCATAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACTAAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCAGTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANCCAACAATAATTCCTCTGTTGT]


>consensus_3115#1 TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCT ACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAG TAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACA AGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACT AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACA AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANC CAACAATAATTCCTCTGTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3115#0      ------------------------------------------------------------
consensus_3115#1      TATGCATTCTAATAATAGAGAATTAAAGAATAAAACTAATGGTTTATATCTTGAAAATCT 60
                                                                                  

consensus_3115#0      -----------------------------------------ATTTTGATTTTTTCGAAGT 19
consensus_3115#1      ACACAAGTACCCCTCTTCAACAGCTGTTAATAATAATGTTCAAAACAATTATGCCGTTAG 120
                                                               *     *** *  **    

consensus_3115#0      TGAAAGATTTTCGCTTT----TTCTTTTTAAGAAAACTGTTCATATTCTACAGTGATACA 75
consensus_3115#1      TAATAAAAATTTAATTAAAGGTAAATCTCAAGAAAACTGTTCATATTCTACAGTGATACA 180
                      * * * *  **   **     *   * * *******************************

consensus_3115#0      AGATGATAAAACAACCCAATATAATCATATCATTTTAAATCCCTCTAGTCAATCTACACT 135
consensus_3115#1      AGATGATAAAACAACCCAATATAATCATATCAATTTAAATCCCTCTAGTCAATCTACACT 240
                      ******************************** ***************************

consensus_3115#0      AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAGGACAACA 195
consensus_3115#1      AGCCCATCTTCTTCCTATTAATTCATCCTTACCACAGTATTCATTTGATATAAGACAACA 300
                      **************************************************** *******

consensus_3115#0      AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 255
consensus_3115#1      AGGAAATATGGTGAATAATGACAGTTCACCGTTGTCTTATCCATATGAGGCGTTTTTAGC 360
                      ************************************************************

consensus_3115#0      CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 315
consensus_3115#1      CCTGAGATCTCAACAACAATCAAATTTATTCAGTCGAAATTCGGATACATTAGATTTGCA 420
                      ************************************************************

consensus_3115#0      TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 375
consensus_3115#1      TAACAAACTTCTTGGACCTGATGACAGTAAACAGCAACACGAAATTGATTCAAAACAACT 480
                      ************************************************************

consensus_3115#0      AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 435
consensus_3115#1      AAGTTTTCCCTTGGCGTTAGACAATCTTATGACAATCACTTCAAACAATCATCGAAATCA 540
                      ************************************************************

consensus_3115#0      GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTACC 495
consensus_3115#1      GTCCTCTTCCCCGTCAACATCTATAGTAAATAATGTTAATCGTTTACAGTCCACATTANC 600
                      ********************************************************** *

consensus_3115#0      AACAAATAATTCCTCTGTTGTATTACCAAATTTACAACCTGACGGACTAGTTCTTGTCAA 555
consensus_3115#1      CAACAATAATTCCTCTGTTGT--------------------------------------- 621
                       *  *****************                                       

consensus_3115#0      AACATCAGTTGGTCAGTTAATATACTGTCCATCTAATCACTATAATAATAATGCCGATTC 615
consensus_3115#1      ------------------------------------------------------------
                                                                                  

consensus_3115#0      CTCAAAAATACATA 629
consensus_3115#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)