cluster # 3119

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Schistosoma mansoni
cluster # 3119 cluster # 3119 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3119#0 length = 467 sequences # 1

consensus_3119#1 length = 313 sequences # 1

consensusID : consensus_3119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [ATTGATTTGTATTCGATTTTATTTCAGCTTCTTTAGTTTTAGACAATGGATCGGATACAATAACAATTAGACCACATGAAGGTTTTTCTGATTTCTTTGTAGCTGTCGCTTTTATTTTATCAATATTTTGTATAGATAGTGAAGAACTGTATTGGTAGGCTGAATGAGGAAGTACACGAAGTATTACTTCTGGTTCATTTAATGCCTCTTGAAATATATCACGCCCCTTTTCAAATGGTATACCGCTTAATGAAATTCCATTAATACTTAGAATCCGATCTCCAACAGATAAACATTGTTCACGTGCTACACGCCCGTTCGGTAAAATACAATGAACTTCAAGACCACATTCAATTCTCGATCCGCCATTGTTATCTGAACAATTGTCATTGCTAGAGTTAAAGGCATCCGAAAAGACAGGTCTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTATCAGAC]

[+] EMBL CD114455             [ATTGATTTGTATTCGATTTTATTTCAGCTTCTTTAGTTTTAGACAATGGATCGGATACAATAACAATTAGACCACATGAAGGTTTTTCTGATTTCTTTGTAGCTGTCGCTTTTATTTTATCAATATTTTGTATAGATAGTGAAGAACTGTATTGGTAGGCTGAATGAGGAAGTACACGAAGTATTACTTCTGGTTCATTTAATGCCTCTTGAAATATATCACGCCCCTTTTCAAATGGTATACCGCTTAATGAAATTCCATTAATACTTAGAATCCGATCTCCAACAGATAAACATTGTTCACGTGCTACACGCCCGTTCGGTAAAATACAATGAACTTCAAGACCACATTCAATTCTCGATCCGCCATTGTTATCTGAACAATTGTCATTGCTAGAGTTAAAGGCATCCGAAAAGACAGGTCTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTATCAGAC]




>consensus_3119#0
ATTGATTTGTATTCGATTTTATTTCAGCTTCTTTAGTTTTAGACAATGGATCGGATACAA
TAACAATTAGACCACATGAAGGTTTTTCTGATTTCTTTGTAGCTGTCGCTTTTATTTTAT
CAATATTTTGTATAGATAGTGAAGAACTGTATTGGTAGGCTGAATGAGGAAGTACACGAA
GTATTACTTCTGGTTCATTTAATGCCTCTTGAAATATATCACGCCCCTTTTCAAATGGTA
TACCGCTTAATGAAATTCCATTAATACTTAGAATCCGATCTCCAACAGATAAACATTGTT
CACGTGCTACACGCCCGTTCGGTAAAATACAATGAACTTCAAGACCACATTCAATTCTCG
ATCCGCCATTGTTATCTGAACAATTGTCATTGCTAGAGTTAAAGGCATCCGAAAAGACAG
GTCTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTATCAGAC

consensusID : consensus_3119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [CACACTCCGGTTTGAGCCAGGGGTACTACCAAAAATGCCTAAACTGAATTCAGTTTCAAATCTACAACCTAATGGTTGACACCCGGGGGTACTTTGATCATAATTCAATTAATAATGGTAATGATAATAAATAATAAGGGAATATTACTGGGCACTTACATTCCCGATCCGCCATTGTTATCTGAAAAATTGTCATTGCTAGAGTTAAAGGGATCCGAAAAGACAGGTTTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTTATCAGACGAATTGTCACTATTGAGTCTTTACTATTTATTGATTCCT]

[+] EMBL AA999595             [CACACTCCGGTTTGAGCCAGGGGTACTACCAAAAATGCCTAAACTGAATTCAGTTTCAAATCTACAACCTAATGGTTGACACCCGGGGGTACTTTGATCATAATTCAATTAATAATGGTAATGATAATAAATAATAAGGGAATATTACTGGGCACTTACATTCCCGATCCGCCATTGTTATCTGAAAAATTGTCATTGCTAGAGTTAAAGGGATCCGAAAAGACAGGTTTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTTATCAGACGAATTGTCACTATTGAGTCTTTACTATTTATTGATTCCT]




>consensus_3119#1
CACACTCCGGTTTGAGCCAGGGGTACTACCAAAAATGCCTAAACTGAATTCAGTTTCAAA
TCTACAACCTAATGGTTGACACCCGGGGGTACTTTGATCATAATTCAATTAATAATGGTA
ATGATAATAAATAATAAGGGAATATTACTGGGCACTTACATTCCCGATCCGCCATTGTTA
TCTGAAAAATTGTCATTGCTAGAGTTAAAGGGATCCGAAAAGACAGGTTTAATTTGTATG
CCTAAATTTTCACCACGTTTAGTATTTATCAGACGAATTGTCACTATTGAGTCTTTACTA
TTTATTGATTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3119#0      ATTGATTTGTATTCGATTTTATTTCAGCTTCTTTAGTTTTAGACAATGGATCGGATACAA 60
consensus_3119#1      ------------------------------------------------------------
                                                                                  

consensus_3119#0      TAACAATTAGACCACATGAAGGTTTTTCTGATTTCTTTGTAGCTGTCGCTTTTATTTTAT 120
consensus_3119#1      ------------------------------------------------------------
                                                                                  

consensus_3119#0      CAATATTTTGTATAGATAGTGAAGAACTGTATTGGTAGGCTGAATGAGGAAGTACACGAA 180
consensus_3119#1      ------------------------------------------------------------
                                                                                  

consensus_3119#0      GTATTACTTCTGGTTCATTTAATGCCTCTTGAAATATATCACGCCCCTTTTCAAATGGTA 240
consensus_3119#1      --------CACACTCCGGTTTGAGCCAGGGGTACTACCAAAAATGCCT----AAACTGAA 48
                                   * *  **   ***    * * **    *    ***    ***  * *

consensus_3119#0      TACCGCTTAATGAAATTCCATTAATACTTAGAATCCGATCTCCAACAGATAAACATTGTT 300
consensus_3119#1      TTCAGTTTCAAATCTACAACCTAATGGTTGACACCCGGGGGTACTTTGAT---CATAATT 105
                      * * * ** *           ****  **   * ***          ***   ***  **

consensus_3119#0      CACGTGCTACACGCCCGTTCGGTAAAATACAATGAACTTCAAGACCACATTCA-ATTCTC 359
consensus_3119#1      CAATTAATAATGGTAATGATAATAAATAATAAGGGAATATTACTGGGCACTTACATTCCC 165
                      **  *  **   *         ****  * ** * * *   *     ** * * **** *

consensus_3119#0      GATCCGCCATTGTTATCTGAACAATTGTCATTGCTAGAGTTAAAGGCATCCGAAAAGACA 419
consensus_3119#1      GATCCGCCATTGTTATCTGAAAAATTGTCATTGCTAGAGTTAAAGGGATCCGAAAAGACA 225
                      ********************* ************************ *************

consensus_3119#0      GGTCTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATT-ATCAGAC----------- 467
consensus_3119#1      GGTTTAATTTGTATGCCTAAATTTTCACCACGTTTAGTATTTATCAGACGAATTGTCACT 285
                      *** ************************************* *******           

consensus_3119#0      ----------------------------
consensus_3119#1      ATTGAGTCTTTACTATTTATTGATTCCT 313