These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAGTTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGGGAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTCGANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTTCGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTTTTTNCCGAACTNGGCCCCN] [+] EMBL SM068 [GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTGAGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCGATTTTATATAGTTCATTCTATTAATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAGTTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGGGAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTCGANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTTCGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTTTTTNCCGAACTNGGCCCCN] consensusID : consensus_312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATTAGTTGTAATTAGTTAGTGAGGTTGATAAGTTGCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTGTTGACTATA] [+] EMBL AA952783 [GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATTAGTTGTAATTAGTTAGTGAGGTTGATAAGTTGCTGAGTAAGTATAATTAGAGAAATTATATAGGTAGTGATAAATTATTGTTGACTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_312#0 GTCGGCACGAGTAAATTTACAGTCTGGTAGATAGTGTACCTTTTGTATCATGATTCATTG 60 consensus_312#1 ------------------------------------------------------------ consensus_312#0 AGGTATTGTAGGTTATTCTATTTCCCGAAAGTTCTCG-ATTTTATATAGTTCATTCTATT 119 consensus_312#1 ----------------------GGCCGAAAGTTCTCTCGTTTTATATAGTTCGGTCTATT 38 ************ ************* ****** consensus_312#0 AATTGTAATTAGTTAGTGAGGTTGGATAAGTTACTGAGTAAGTATAATTAGAGAAATTAT 179 consensus_312#1 AGTTGTAATTAGTTAGTGAGGTTG-ATAAGTTGCTGAGTAAGTATAATTAGAGAAATTAT 97 * ********************** ******* *************************** consensus_312#0 ATAGGTAGTGATAAATTATTCGTGTGATCTGATATCTGGTTAGTGACTTTNTTTNTCGAG 239 consensus_312#1 ATAGGTAGTGATAAATTATT-GT-TGACTATA---------------------------- 127 ******************** ** *** * consensus_312#0 TTNGAGAAATNGCTGAGTGTGGTTGGTTNTTTNGGNCCGNGCTCNTTCTANTTNTGGGGG 299 consensus_312#1 ------------------------------------------------------------ consensus_312#0 GAAAGNGCCTGNAGNTTNNGNTTGCCCCTNGGTCTNGNGAANGTTNTTTCCCACGCTTTC 359 consensus_312#1 ------------------------------------------------------------ consensus_312#0 GANCGNTTGGGNTAATNNANCCCCTTGGTGGGTTACGGACTAGNCACTTTCGGANAACTT 419 consensus_312#1 ------------------------------------------------------------ consensus_312#0 CGCNNTNTACCCGCCGGNNGGGAATNCCGTNGGGTTNGNTTACCNGNGNNGGTTCCNTTT 479 consensus_312#1 ------------------------------------------------------------ consensus_312#0 TTTNCCGAACTNGGCCCCN 498 consensus_312#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||