cluster # 3129

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Schistosoma mansoni
cluster # 3129 cluster # 3129 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3129#0 length = 419 sequences # 1

consensus_3129#1 length = 410 sequences # 1

consensusID : consensus_3129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GCAATTTCCCTGGGGTAAAACATCATTTACACAAGTCTTTTCAGCCCAATAAGCTAATGAAACAAGCTGTAAAGCTCTGGAATAACATGCAAAAGCTGATGACCAAATGTATTTGAATAATTCCTCTCTATTATTTCTACCATTTGAACTATCCGAGTGTAATGTTAAACATTTCAAATGATGATTTACTAACCAAGAACCTCTTTCTTTTAAATACCAAGCTCGGTATAACCATTGAATAGCTAAATCAGGGTTCCAGTCAGCTGTAGTATTTTCTCTTACATCTGATTCTAATATTTCAACTGGAGCATTCATAGTAGGATCGCCACAGATCGGTGGAACAAGTACATAGTCAACGCGTAATGATAGTTTATACTCTGTGGGATCTTTGTGTCTTTCGTCTCTCTCAACGGATTCTA]

[+] EMBL CD069235             [GCAATTTCCCTGGGGTAAAACATCATTTACACAAGTCTTTTCAGCCCAATAAGCTAATGAAACAAGCTGTAAAGCTCTGGAATAACATGCAAAAGCTGATGACCAAATGTATTTGAATAATTCCTCTCTATTATTTCTACCATTTGAACTATCCGAGTGTAATGTTAAACATTTCAAATGATGATTTACTAACCAAGAACCTCTTTCTTTTAAATACCAAGCTCGGTATAACCATTGAATAGCTAAATCAGGGTTCCAGTCAGCTGTAGTATTTTCTCTTACATCTGATTCTAATATTTCAACTGGAGCATTCATAGTAGGATCGCCACAGATCGGTGGAACAAGTACATAGTCAACGCGTAATGATAGTTTATACTCTGTGGGATCTTTGTGTCTTTCGTCTCTCTCAACGGATTCTA]




>consensus_3129#0
GCAATTTCCCTGGGGTAAAACATCATTTACACAAGTCTTTTCAGCCCAATAAGCTAATGA
AACAAGCTGTAAAGCTCTGGAATAACATGCAAAAGCTGATGACCAAATGTATTTGAATAA
TTCCTCTCTATTATTTCTACCATTTGAACTATCCGAGTGTAATGTTAAACATTTCAAATG
ATGATTTACTAACCAAGAACCTCTTTCTTTTAAATACCAAGCTCGGTATAACCATTGAAT
AGCTAAATCAGGGTTCCAGTCAGCTGTAGTATTTTCTCTTACATCTGATTCTAATATTTC
AACTGGAGCATTCATAGTAGGATCGCCACAGATCGGTGGAACAAGTACATAGTCAACGCG
TAATGATAGTTTATACTCTGTGGGATCTTTGTGTCTTTCGTCTCTCTCAACGGATTCTA

consensusID : consensus_3129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CTGTATTAATGATATCTTGATGATAATAATCATTAGTTGATGAATATATAGAAGAATCTAATTGACATGAAAGAAGATATAAAGCATGTGAACAATTTCGAGCACAATATTCATTAGATCCAACTTTTAATTGACATAAAGCAACATTTGAAAGAAGGATAAACATCAAGCGTAAAGGTTTACATTGTAGTGGAAACATAGTTTTATGATCAATATCCCCAAAACGATCCCAATCTATATAGTCTGAACTATTCAATTTTTCACCGCCATTAGAAGTTATGGGTTTTTCACCTGATACCACTTGAATCCAGTGTATATTGTTTGTGCTAGTTTTATGGTCAGATCCATTTTCGTTAATTTCCAGTGGTAAAACATCATTTACACAAGTCTTTCCAGCCCAATAAGCTTAT]

[+] EMBL CD140103             [CTGTATTAATGATATCTTGATGATAATAATCATTAGTTGATGAATATATAGAAGAATCTAATTGACATGAAAGAAGATATAAAGCATGTGAACAATTTCGAGCACAATATTCATTAGATCCAACTTTTAATTGACATAAAGCAACATTTGAAAGAAGGATAAACATCAAGCGTAAAGGTTTACATTGTAGTGGAAACATAGTTTTATGATCAATATCCCCAAAACGATCCCAATCTATATAGTCTGAACTATTCAATTTTTCACCGCCATTAGAAGTTATGGGTTTTTCACCTGATACCACTTGAATCCAGTGTATATTGTTTGTGCTAGTTTTATGGTCAGATCCATTTTCGTTAATTTCCAGTGGTAAAACATCATTTACACAAGTCTTTCCAGCCCAATAAGCTTAT]




>consensus_3129#1
CTGTATTAATGATATCTTGATGATAATAATCATTAGTTGATGAATATATAGAAGAATCTA
ATTGACATGAAAGAAGATATAAAGCATGTGAACAATTTCGAGCACAATATTCATTAGATC
CAACTTTTAATTGACATAAAGCAACATTTGAAAGAAGGATAAACATCAAGCGTAAAGGTT
TACATTGTAGTGGAAACATAGTTTTATGATCAATATCCCCAAAACGATCCCAATCTATAT
AGTCTGAACTATTCAATTTTTCACCGCCATTAGAAGTTATGGGTTTTTCACCTGATACCA
CTTGAATCCAGTGTATATTGTTTGTGCTAGTTTTATGGTCAGATCCATTTTCGTTAATTT
CCAGTGGTAAAACATCATTTACACAAGTCTTTCCAGCCCAATAAGCTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3129#0      --------GCAATTTCCCTGGGGTAAAACATCATTTACACAAGTCTTTTCAGCCCAATA- 51
consensus_3129#1      CTGTATTAATGATATCTTGATGATAATA-ATCATTAGTTGATGAATATATAGAAGAATCT 59
                                 ** **     * *** * ******     * *  * *  **   ***  

consensus_3129#0      AGCTAA--TGAAACAAGCTGTAAAGCTCTGGAATAACATGCAAAA-GCTGATGACCAAAT 108
consensus_3129#1      AATTGACATGAAAGAAGATATAAAGCATGTGAACAATTTCGAGCACAATATTCATTAGAT 119
                      *  * *  ***** *** * ******    *** **  *  *  *   *  * *  * **

consensus_3129#0      GTA--TTTGAATAATTCCTCTCTATTATTTCTACCATTTGAACTATCCGAGTGTAATGTT 166
consensus_3129#1      CCAACTTTTAATTGACATAAAGCAACATTTGAAAGAAGGATAAACATCAAGCGTAAAGGT 179
                        *  *** ***           *  ****  *  *     *     * ** **** * *

consensus_3129#0      AAACATTTCAAATGATGATTTACTAACCAAGAACCTCTTTCTTTTAAATACCAAGCTCGG 226
consensus_3129#1      TTACATTGTAG-TGGAAACATAGTT-TTATGATCAATATCCCCAAAACGATCCCAATCTA 237
                        *****  *  **   *  ** *    * ** *    * *    **  * *    **  

consensus_3129#0      TATAACCATTGAATAGCTAAATCAGGGTTCCAGTCAGCTGTAGTATTTTCTCTTACATCT 286
consensus_3129#1      TATAGTC--TGAACTATTCAATTTT--TCACCGCCATTAGAAGTTATGGGTTTTTCACCT 293
                      ****  *  ****    * ***     *  * * **   * ***  *   * ** ** **

consensus_3129#0      GATTCTAATATTTCAACTGGAGCATTCATAGTAGGATCGCCACAGATCGGTGGAACAAGT 346
consensus_3129#1      GATACCA----CTTGAATCCAGTGTATATTGTTTGTGCTAGTTTTATGGTCAGATCCATT 349
                      *** * *     *  * *  **  *  ** **  *  *       ** *   ** * * *

consensus_3129#0      ACATAGTCAACGCGTAATGATAGTTTATACTCTGTGGGATCTTTGTGTCTTTCGTCTCTC 406
consensus_3129#1      T--TCGTTAATTTCCAGTGGTAAAACATCATTTACACAAGTCTT------TCCAGCCCAA 401
                         * ** **     * ** **    **  * *     *   **      * *  * *  

consensus_3129#0      TCAACGGATTCTA 419
consensus_3129#1      TAAGCTTAT---- 410
                      * * *  **