These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCTATACAAATGGCTTACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCACCTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAATTACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAGGCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA] [+] EMBL CD114777 [ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCTATACAAATGGCTTACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCACCTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAATTACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAGGCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA] consensusID : consensus_3130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATTCATGTGCATTTGAATTAGGTAAGCCATCTGGATCAATACCACTATCATCGTCTG] [+] EMBL CD168061 [GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATTCATGTGCATTTGAATTAGGTAAGCCATCTGGATCAATACCACTATCATCGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3130#0 ATAAACATTCAATTAGTTAGCTAGGAAGGAAATGTTAAGAAAATGCT-ATACAAATGGCT 59 consensus_3130#1 GAGACAATGCTAATGGTGGAACTGCAGGAGGGAGTGGCGTAGATGATGATGGATCAGATT 60 * ** * * * ** * * * ** * * *** * ** * * * consensus_3130#0 TACGGGCTCTTAAACTGGGAAAATTTTCCTATATTCAGCATTCAAAGTTTACATGTGCAC 119 consensus_3130#1 CATGTGCATTTGAATTAGGTAAGCCATCTGGA--TCAATAC-CACTATCATCGTCTG--- 114 * * ** ** ** * ** ** ** *** * ** * * * ** consensus_3130#0 CTTGTATCGCTTACTTTGGAGAACAGCGGAGTCAGTTTATGGACGCGTCAATGTTAAAAT 179 consensus_3130#1 ------------------------------------------------------------ consensus_3130#0 TACCACCGTCTCAGATCCAATTCATACCGAAAAATGCATTTTCAAGTTCATCAGGAAAAG 239 consensus_3130#1 ------------------------------------------------------------ consensus_3130#0 GCTCGTCAGACGATGATAGTGGTATTGATCCAGATGGCTTA 280 consensus_3130#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||