cluster # 3143

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Schistosoma mansoni
cluster # 3143 cluster # 3143 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3143#0 length = 440 sequences # 1

consensus_3143#1 length = 439 sequences # 1

consensusID : consensus_3143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAATTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAATTAAAATACAACGATAAGGTGATCCGGATACGCTGATTCGATTAATCCAATTATCATAATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCC]

[+] EMBL CD188838             [ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAATTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAATTAAAATACAACGATAAGGTGATCCGGATACGCTGATTCGATTAATCCAATTATCATAATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCC]




>consensus_3143#0
ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAA
TTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAAT
TAAAATACAACGATAAGGTGATCCGGATACGCTGATTCGATTAATCCAATTATCATAATT
GTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACC
AAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAA
CATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTT
AGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTT
CTGTAAACAAAAGACATCCC

consensusID : consensus_3143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [CAGAAATCGGTCTATAATCAAAATTTTGAAGTACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAAATTGAGTGAAATGAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGCTTTTGTACAAAAAATTCAACCCACTTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG]

[-] EMBL CD069322             [CAGAAATCGGTCTATAATCAAAATTTTGAAGTACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAAATTGAGTGAAATGAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGCTTTTGTACAAAAAATTCAACCCACTTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG]




>consensus_3143#1
CAGAAATCGGTCTATAATCAAAATTTTGAAGTACATCTGTTAAGACTGAACAAAGTGTGC
GGCTTTCTAAGATAAATTGAGTGAAATGAGATTGAAACTTATAACTCAGTAATGGAAATT
TTAGTCACTTGTCCTCTGAGACAACGCTTTTGTACAAAAAATTCAACCCACTTGAACTTT
ATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAA
TTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAA
AGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGC
AGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCCCAAATCCATA
TTCATGTAACAGATGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3143#0      ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAA 60
consensus_3143#1      -----------------------------CAGAAATCGGTCTATAATCAAAATTTTGAAG 31
                                                        **   * ** *  **  * *  *** 

consensus_3143#0      TTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAAT 120
consensus_3143#1      T---ACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAA-ATTGAGTGAAAT 87
                      *   * * *   *   * *  ** **** *      * *     **  ** *    ****

consensus_3143#0      TAAAATACAACG-ATAAGGTGATCCGGATACGCTGATTCGATTAATCC---AATTATCAT 176
consensus_3143#1      GAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGC 147
                       * * *  ***  ****     *   *  *   * * **  **   *    *   * *  

consensus_3143#0      AATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGG 236
consensus_3143#1      TTTTGTACAAAAAATTCAACCCAC-TTGAACTTTATCTAATATAGCATGAAAGTCAGCGG 206
                        ****  *  **       * *  ***********************************

consensus_3143#0      CACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGT 296
consensus_3143#1      CACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGT 266
                      ************************************************************

consensus_3143#0      CAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCA 356
consensus_3143#1      CAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCA 326
                      ************************************************************

consensus_3143#0      ATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATC 416
consensus_3143#1      ATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATC 386
                      ************************************************************

consensus_3143#0      TTTTCTGTAAACAAAAGACATCCC----------------------------- 440
consensus_3143#1      TTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG 439
                      ************************