These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAATTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAATTAAAATACAACGATAAGGTGATCCGGATACGCTGATTCGATTAATCCAATTATCATAATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCC] [+] EMBL CD188838 [ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAATTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAATTAAAATACAACGATAAGGTGATCCGGATACGCTGATTCGATTAATCCAATTATCATAATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCC] consensusID : consensus_3143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CAGAAATCGGTCTATAATCAAAATTTTGAAGTACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAAATTGAGTGAAATGAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGCTTTTGTACAAAAAATTCAACCCACTTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG] [-] EMBL CD069322 [CAGAAATCGGTCTATAATCAAAATTTTGAAGTACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAAATTGAGTGAAATGAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGCTTTTGTACAAAAAATTCAACCCACTTGAACTTTATCTAATATAGCATGAAAGTCAGCGGCACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGTCAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCAATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATCTTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3143#0 ATCATTGATAGCAGGACTTGAATTAGCCGTCATTATTACTTTACATCCACGACTAAGAAA 60 consensus_3143#1 -----------------------------CAGAAATCGGTCTATAATCAAAATTTTGAAG 31 ** * ** * ** * * *** consensus_3143#0 TTCCATAGCAAATGGTAGTACACCAAGTATAATATCTGCACCACTATTATCGCAGAAAAT 120 consensus_3143#1 T---ACATCTGTTAAGACTGAACAAAGTGTGCGGCTTTCTAAGATAA-ATTGAGTGAAAT 87 * * * * * * * ** **** * * * ** ** * **** consensus_3143#0 TAAAATACAACG-ATAAGGTGATCCGGATACGCTGATTCGATTAATCC---AATTATCAT 176 consensus_3143#1 GAGATTGAAACTTATAACTCAGTAATGGAAATTTTAGTCACTTGTCCTCTGAGACAACGC 147 * * * *** **** * * * * * ** ** * * * * consensus_3143#0 AATTGTCAACTAACCAAGGTCTAGATTGAACTTTATCTAATATAGCATGAAAGTCAGCGG 236 consensus_3143#1 TTTTGTACAAAAAATTCAACCCAC-TTGAACTTTATCTAATATAGCATGAAAGTCAGCGG 206 **** * ** * * *********************************** consensus_3143#0 CACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGT 296 consensus_3143#1 CACCAAATTTATTCTTTGGAGCTTCCTTTAGAAATTGAATTGCCTCAGCTGCACCCCAGT 266 ************************************************************ consensus_3143#0 CAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCA 356 consensus_3143#1 CAAACATATTACCAGCCAAAAGACCTTCAATCAAAGAAAGTTGACGATTAGACCAATCCA 326 ************************************************************ consensus_3143#0 ATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATC 416 consensus_3143#1 ATTTAGAAAGTTCACTTAATCGATCCGTAAGAGCAGAAAGAGCAGCTCGATTTTCAAATC 386 ************************************************************ consensus_3143#0 TTTTCTGTAAACAAAAGACATCCC----------------------------- 440 consensus_3143#1 TTTTCTGTAAACAAAAGACATCCCCAAATCCATATTCATGTAACAGATGATAG 439 ************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||