cluster # 3159

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Schistosoma mansoni
cluster # 3159 cluster # 3159 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3159#0 length = 546 sequences # 1

consensus_3159#1 length = 448 sequences # 1

consensusID : consensus_3159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [TTTTTATAAGTACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTTTTCATAATGATTGATACTTCCATTACTCTTTTAAGGATATCCAGTGGTTAGTATCACTGTTGTTCCGATAACCAATAGAAGCGAAATTTTGTTGATTAAAAAGTACTTGTCTTTGAAAATTAGGTGAATTATCAAAATCAGATCCATTCAATAATCCACAACAATTTAGAGTTGGCATAATAACTGAATATAGTATACTATCCGTATTATTAGAACCAATGGAACGATAATTTTGCAATGACTTATAAGTAATATTTCTAGCTAACTTGAATACTGTTTCTCGATTGGTATAGTAAAAACTCATTGCAGTAATCTCAATAACGATCAATACTAAAAGTAATCCAATGTACACTCTGAGGCAAAGAATACTCTTACAACTTGCTCCACAGAAACCAAATAAACAAATAGCCAAGGCTACTAACCCCAGTATAAATAAAATTAAACCGAATGGACTTGTTACTTGTAAGATAGCAGATGCTACATCTGT]

[+] EMBL CD069616             [TTTTTATAAGTACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTTTTCATAATGATTGATACTTCCATTACTCTTTTAAGGATATCCAGTGGTTAGTATCACTGTTGTTCCGATAACCAATAGAAGCGAAATTTTGTTGATTAAAAAGTACTTGTCTTTGAAAATTAGGTGAATTATCAAAATCAGATCCATTCAATAATCCACAACAATTTAGAGTTGGCATAATAACTGAATATAGTATACTATCCGTATTATTAGAACCAATGGAACGATAATTTTGCAATGACTTATAAGTAATATTTCTAGCTAACTTGAATACTGTTTCTCGATTGGTATAGTAAAAACTCATTGCAGTAATCTCAATAACGATCAATACTAAAAGTAATCCAATGTACACTCTGAGGCAAAGAATACTCTTACAACTTGCTCCACAGAAACCAAATAAACAAATAGCCAAGGCTACTAACCCCAGTATAAATAAAATTAAACCGAATGGACTTGTTACTTGTAAGATAGCAGATGCTACATCTGT]




>consensus_3159#0
TTTTTATAAGTACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTTT
TCATAATGATTGATACTTCCATTACTCTTTTAAGGATATCCAGTGGTTAGTATCACTGTT
GTTCCGATAACCAATAGAAGCGAAATTTTGTTGATTAAAAAGTACTTGTCTTTGAAAATT
AGGTGAATTATCAAAATCAGATCCATTCAATAATCCACAACAATTTAGAGTTGGCATAAT
AACTGAATATAGTATACTATCCGTATTATTAGAACCAATGGAACGATAATTTTGCAATGA
CTTATAAGTAATATTTCTAGCTAACTTGAATACTGTTTCTCGATTGGTATAGTAAAAACT
CATTGCAGTAATCTCAATAACGATCAATACTAAAAGTAATCCAATGTACACTCTGAGGCA
AAGAATACTCTTACAACTTGCTCCACAGAAACCAAATAAACAAATAGCCAAGGCTACTAA
CCCCAGTATAAATAAAATTAAACCGAATGGACTTGTTACTTGTAAGATAGCAGATGCTAC
ATCTGT

consensusID : consensus_3159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [CAACAAATAAAGAAGTCAACTGATGATCTGAAATGTCAGAAATATTTGCCCCTCCTTTTTTTATAGAAAGTAACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTTTTCATAATGATTGATACTTCCATTACTCCTTTAAGGATATCCGGTGGTTAGTATCACTGTTGTTCCGATAACCAATAGAAGTTGGAATAAAATGACAATCAATCCACAAATCACAATTAATCCACCATAGAAACTAATTATCTTTCGTAGTTTTGTCCAACAACCTTCATGAATATTTGAATTCTTACTATTAAATTCTCCTGGACATGTTGGATCGAGAACAACAAATTTGGCATCCATTTTACAACAGGGGATAGGATATTTCAAATCGAAACTTTGTTGATTAAAAAGTACTTGTCTTTGAAAATTAGGTGAATTATCAAAATCA]

[+] EMBL CD069377             [CAACAAATAAAGAAGTCAACTGATGATCTGAAATGTCAGAAATATTTGCCCCTCCTTTTTTTATAGAAAGTAACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTTTTCATAATGATTGATACTTCCATTACTCCTTTAAGGATATCCGGTGGTTAGTATCACTGTTGTTCCGATAACCAATAGAAGTTGGAATAAAATGACAATCAATCCACAAATCACAATTAATCCACCATAGAAACTAATTATCTTTCGTAGTTTTGTCCAACAACCTTCATGAATATTTGAATTCTTACTATTAAATTCTCCTGGACATGTTGGATCGAGAACAACAAATTTGGCATCCATTTTACAACAGGGGATAGGATATTTCAAATCGAAACTTTGTTGATTAAAAAGTACTTGTCTTTGAAAATTAGGTGAATTATCAAAATCA]




>consensus_3159#1
CAACAAATAAAGAAGTCAACTGATGATCTGAAATGTCAGAAATATTTGCCCCTCCTTTTT
TTATAGAAAGTAACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTT
TTCATAATGATTGATACTTCCATTACTCCTTTAAGGATATCCGGTGGTTAGTATCACTGT
TGTTCCGATAACCAATAGAAGTTGGAATAAAATGACAATCAATCCACAAATCACAATTAA
TCCACCATAGAAACTAATTATCTTTCGTAGTTTTGTCCAACAACCTTCATGAATATTTGA
ATTCTTACTATTAAATTCTCCTGGACATGTTGGATCGAGAACAACAAATTTGGCATCCAT
TTTACAACAGGGGATAGGATATTTCAAATCGAAACTTTGTTGATTAAAAAGTACTTGTCT
TTGAAAATTAGGTGAATTATCAAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3159#0      ---------------------------------------------------------TTT 3
consensus_3159#1      CAACAAATAAAGAAGTCAACTGATGATCTGAAATGTCAGAAATATTTGCCCCTCCTTTTT 60
                                                                               ***

consensus_3159#0      TTATA---AGTA-CAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTT 59
consensus_3159#1      TTATAGAAAGTAACAGATACAGTCAATAGTTGAGTAATACGAGTACATCTTTCTCTTTTT 120
                      *****   **** ***********************************************

consensus_3159#0      TTCATAATGATTGATACTTCCATTACTCTTTTAAGGATATCCAGTGGTTAGTATCACTGT 119
consensus_3159#1      TTCATAATGATTGATACTTCCATTACTCCTTTAAGGATATCCGGTGGTTAGTATCACTGT 180
                      **************************** ************* *****************

consensus_3159#0      TGTTCCGATAACCAATAGAAGCGAAATTTTGTTGATTAAAAAGTACTTGTCTTTGAAAAT 179
consensus_3159#1      TGTTCCGATAACCAATAGAAGTTGGAATAAAATGACAATCAA---TCCACAAATCACAAT 237
                      *********************    * *    ***  *  **           * * ***

consensus_3159#0      TAGGTGAATTATCAAAATCAGATCCATTCAATAATCCA---CAACAATTTAGAGTTGGCA 236
consensus_3159#1      TAA-TCCACCATAGAAACTAATTATCTTTCGTAGTTTTGTCCAACAACCTTCA-TGAATA 295
                      **  *  *  **  ***  *  *   **   ** *      ******  *  * *    *

consensus_3159#0      TAATAACTGAATATAGTATACTATCCGTATTAT-TAGAACCAATGGAACGATAATTTTGC 295
consensus_3159#1      TTTGAATTCTTACTATTAAATTCTCCTGGACATGTTGGATCGA--GAACAACAAATTTGG 353
                      *   ** *     ** ** * * ***     ** * * * * *  **** * ** **** 

consensus_3159#0      AATGACTTATAAGTAATATTTCTAGCTAACTTGAATACTGTTTCTCGATTGGTATAGTAA 355
consensus_3159#1      CATCCATTTTACAACAGGGGATAGGATATTTCAAAT--CGAAACTTTGTTGAT-TAAAAA 410
                       **   ** **    *        * **  *  ***   *   **   *** * **  **

consensus_3159#0      AAACTCATTGCAGTAATCTCAAT-AACGATCAATACTAAAAGTAATCCAATGTACACTCT 414
consensus_3159#1      GTACTTGTCTTTGAAAATTAGGTGAATTATCAAAATCA---------------------- 448
                        ***  *    * **  *   * **  ***** *  *                      

consensus_3159#0      GAGGCAAAGAATACTCTTACAACTTGCTCCACAGAAACCAAATAAACAAATAGCCAAGGC 474
consensus_3159#1      ------------------------------------------------------------
                                                                                  

consensus_3159#0      TACTAACCCCAGTATAAATAAAATTAAACCGAATGGACTTGTTACTTGTAAGATAGCAGA 534
consensus_3159#1      ------------------------------------------------------------
                                                                                  

consensus_3159#0      TGCTACATCTGT 546
consensus_3159#1      ------------