cluster # 3160

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Schistosoma mansoni
cluster # 3160 cluster # 3160 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3160#0 length = 465 sequences # 1

consensus_3160#1 length = 317 sequences # 1

consensusID : consensus_3160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTGTAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTTCACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTTTAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT]

[+] EMBL CD115315             [GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTGTAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTTCACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTTTAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT]




>consensus_3160#0
GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTG
TAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTT
CACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTT
TAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAA
ACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGC
CTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTC
CTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAG
TATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT

consensusID : consensus_3160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [CTCGGTCACCCCTGGCAAGGGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCTCTCCCT]

[+] EMBL CD167819             [CTCGGTCACCCCTGGCAAGGGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCTCTCCCT]




>consensus_3160#1
CTCGGTCACCCCTGGCAAGGGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATC
GGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTA
TCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACT
TCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACC
TTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACA
TTCTCTCTCCTCTCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3160#0      GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTG 60
consensus_3160#1      ------------------------------------------------------------
                                                                                  

consensus_3160#0      TAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTT 120
consensus_3160#1      ------------------------------------------------------------
                                                                                  

consensus_3160#0      CACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTT 180
consensus_3160#1      ----------------------------------------------CTCGGTCACCCCTG 14
                                                                    **  *   *   * 

consensus_3160#0      TAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAA 240
consensus_3160#1      GCAAG---GGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAA 71
                        **      *    **      *************************************

consensus_3160#0      ACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGC 300
consensus_3160#1      ACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGC 131
                      ************************************************************

consensus_3160#0      CTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTC 360
consensus_3160#1      CTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTC 191
                      ************************************************************

consensus_3160#0      CTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAG 420
consensus_3160#1      CTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAG 251
                      ************************************* **********************

consensus_3160#0      TATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT--------------- 465
consensus_3160#1      TATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCT 311
                      ***************************** ********* *****               

consensus_3160#0      ------
consensus_3160#1      CTCCCT 317