cluster # 3163

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Schistosoma mansoni
cluster # 3163 cluster # 3163 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3163#0 length = 608 sequences # 1

consensus_3163#1 length = 441 sequences # 1

consensusID : consensus_3163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [TAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTGATATACGATCATTAGTAGTTAATAACCCATGAGTAATGATAGTAATAATGATAATAACAGTTCAATGAATAAAAAAAAACTGTTATTGAAATGATATTTGTTGTAACTGTCATCATAGAATTTCGTAAGGAAACGTTTCTCAACAATATTTTGCTCATTGATGTGTGTGTCTGTAGATCAACAGAGGAAACATTGAGTTTGATGATTGAGTCGTAAGAATAAACAATGATGGACATAATGTGATGAGAGAGATGTAATATAGAGGAAAGAATACATTAGCAACGATCGGATGAACCCTTTTTTTTACCGTTGTGATTACGAAAAAAAAAGAGAGAAAAAAGACAATGAACCAGAAGAAAATATGGTTTTATATAACAGTACTAATGATAATAAGAATCACAGGTCTCATTGTAGAACAACATTTATCCACATGGGAAAAATAATTTGAAAAAAACAAAAACAAACCAATATGGATAGATTACTTTTGAGGAAGAGATCTTCAGTAAAACTCGACATACGGATATACGTGCAACCACCAACCCACCCACCCATCCACACACA]

[+] EMBL CD115394             [TAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTGATATACGATCATTAGTAGTTAATAACCCATGAGTAATGATAGTAATAATGATAATAACAGTTCAATGAATAAAAAAAAACTGTTATTGAAATGATATTTGTTGTAACTGTCATCATAGAATTTCGTAAGGAAACGTTTCTCAACAATATTTTGCTCATTGATGTGTGTGTCTGTAGATCAACAGAGGAAACATTGAGTTTGATGATTGAGTCGTAAGAATAAACAATGATGGACATAATGTGATGAGAGAGATGTAATATAGAGGAAAGAATACATTAGCAACGATCGGATGAACCCTTTTTTTTACCGTTGTGATTACGAAAAAAAAAGAGAGAAAAAAGACAATGAACCAGAAGAAAATATGGTTTTATATAACAGTACTAATGATAATAAGAATCACAGGTCTCATTGTAGAACAACATTTATCCACATGGGAAAAATAATTTGAAAAAAACAAAAACAAACCAATATGGATAGATTACTTTTGAGGAAGAGATCTTCAGTAAAACTCGACATACGGATATACGTGCAACCACCAACCCACCCACCCATCCACACACA]




>consensus_3163#0
TAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTGATATACGATCATT
AGTAGTTAATAACCCATGAGTAATGATAGTAATAATGATAATAACAGTTCAATGAATAAA
AAAAAACTGTTATTGAAATGATATTTGTTGTAACTGTCATCATAGAATTTCGTAAGGAAA
CGTTTCTCAACAATATTTTGCTCATTGATGTGTGTGTCTGTAGATCAACAGAGGAAACAT
TGAGTTTGATGATTGAGTCGTAAGAATAAACAATGATGGACATAATGTGATGAGAGAGAT
GTAATATAGAGGAAAGAATACATTAGCAACGATCGGATGAACCCTTTTTTTTACCGTTGT
GATTACGAAAAAAAAAGAGAGAAAAAAGACAATGAACCAGAAGAAAATATGGTTTTATAT
AACAGTACTAATGATAATAAGAATCACAGGTCTCATTGTAGAACAACATTTATCCACATG
GGAAAAATAATTTGAAAAAAACAAAAACAAACCAATATGGATAGATTACTTTTGAGGAAG
AGATCTTCAGTAAAACTCGACATACGGATATACGTGCAACCACCAACCCACCCACCCATC
CACACACA

consensusID : consensus_3163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [TTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTACTACATTTCTATCAAAATGAACTAATCAATTCATGATGGGTTGTTTTCTTCTTAAATTCTATCCATTTCGATTTCTTTTCTTAATAAGCAGAATTTCAAAAATTTGATGAACAGAAAACTAAGTTAGAAAACACACAAATCTAAGTAAACATGCACATGTGAAAACATGCAAAATGAATGGTTGAATGAAAAAAAAAAAGAAGAAGAAGAACTAGTTTACTTTCTTTAATTTCTACTATAAAGATCTAGGATTCAAATTAAAAAAAAATTTTTTGGAATGTTGTTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTACGTAAAAAAAAGGGGCGGNCNT]

[+] EMBL CD185103             [TTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTACTACATTTCTATCAAAATGAACTAATCAATTCATGATGGGTTGTTTTCTTCTTAAATTCTATCCATTTCGATTTCTTTTCTTAATAAGCAGAATTTCAAAAATTTGATGAACAGAAAACTAAGTTAGAAAACACACAAATCTAAGTAAACATGCACATGTGAAAACATGCAAAATGAATGGTTGAATGAAAAAAAAAAAGAAGAAGAAGAACTAGTTTACTTTCTTTAATTTCTACTATAAAGATCTAGGATTCAAATTAAAAAAAAATTTTTTGGAATGTTGTTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTACGTAAAAAAAAGGGGCGGNCNT]




>consensus_3163#1
TTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTGCCACTATTAT
TACTAGTACTGCTACTATTACTACTACTACATTTCTATCAAAATGAACTAATCAATTCAT
GATGGGTTGTTTTCTTCTTAAATTCTATCCATTTCGATTTCTTTTCTTAATAAGCAGAAT
TTCAAAAATTTGATGAACAGAAAACTAAGTTAGAAAACACACAAATCTAAGTAAACATGC
ACATGTGAAAACATGCAAAATGAATGGTTGAATGAAAAAAAAAAAGAAGAAGAAGAACTA
GTTTACTTTCTTTAATTTCTACTATAAAGATCTAGGATTCAAATTAAAAAAAAATTTTTT
GGAATGTTGTTTGGTCTTTTTTTTTACGTAGTGGTCGTTTATATTTGGTAATACTACTAC
GTAAAAAAAAGGGGCGGNCNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3163#0      TAATACTACTGCCACTATTATTACTAGTACTGCTACTATTACTACTGATATA-CGATCAT 59
consensus_3163#1      -------------------------------TTTGGTCTTTTTTTTTACGTAGTGGTCGT 29
                                                       *  * **  *  * *  **  * ** *

consensus_3163#0      TAGTAGTTAATAACCCATGAGTAATGATAGTAATAATGATAATAACAGTTCAATGAATAA 119
consensus_3163#1      TTATATTTGGTAATAC-----TACTGCCACTATTATTACTAGTACTGCTACTATTACTAC 84
                      *  ** **  ***  *     ** **  * ** ** *  ** **    * * ** * ** 

consensus_3163#0      AAAAAAACTGTTATTGAAATGATATTTGTTGTAACTGTCATCATAGAATTTCGTAAGGAA 179
consensus_3163#1      TACTACATTTCTATCAAAATGAACTAATCAATTCATGATGGGTTGTTTTCTTCTTAAATT 144
                       *  * * *  ***  ******  *      *   **      *    * *  * *    

consensus_3163#0      ACGTTTCTCAACAATATTTTGCTCATTGATGTGTGTGTCTGTAGATCAACAGAGGAAACA 239
consensus_3163#1      CTATCCATTTCGATTTCTTTTCTTAATAAGCAGAATTTCAAAAATTTGATGAACAGAAAA 204
                         *   *    * *  *** ** * * *   *  * **   *  *  *   *   ** *

consensus_3163#0      TTGAGTTTGATGATTGAGTCGTAAGAATAAACAATGATGGACATAATGTGATGAGAGAGA 299
consensus_3163#1      CTAAGTTAGAAAACA----CACAAATCTAAGTAAACATGCACATGTGAAAACATGCAAAA 260
                       * **** **  *      *  **   ***  **  *** ****      *   *  * *

consensus_3163#0      TGTAATATAGAGGAAAGAATACATTAGCAACGATCGGATGAACCCTTTTTTTTACCGTTG 359
consensus_3163#1      TGAATGGTTGAATGAAAAAAAAA-----AAGAAGAAGAAGAACTAGTTTACTTTCTTTAA 315
                      ** *   * **   ** ** * *     **  *   ** ****   ***  ** *  *  

consensus_3163#0      TGATTACGAAAAAAAAAGAGAGAAAAAAGACAATGAACCAGAAGAAAATATGGTTTTATA 419
consensus_3163#1      TTTCTACTATAAAGATCTAG--------------GATTCAAATTAAAAAAAAATTTTTTG 361
                      *   *** * *** *   **              **  ** *  **** *   **** * 

consensus_3163#0      TAACAGTACTAATGATAATAAGAATCACAGGTCTCATTGTAGAACAA-CATTTATCCACA 478
consensus_3163#1      GAATGTTGTT--TGGTCTT------------TTTTTTTACGTAGTGGTCGTTTAT--ATT 405
                       **   *  *  ** *  *            * *  **    *     * *****  *  

consensus_3163#0      TGGGAAAAATAATTTGAAAAAAACAAAAACAAACCAATATGGATAGATTACTTTTGAGGA 538
consensus_3163#1      TGGTAATACTACTACGTAAAAAAAAGGGGCGGNCNT------------------------ 441
                      *** ** * ** *  * ****** *    *   *                          

consensus_3163#0      AGAGATCTTCAGTAAAACTCGACATACGGATATACGTGCAACCACCAACCCACCCACCCA 598
consensus_3163#1      ------------------------------------------------------------
                                                                                  

consensus_3163#0      TCCACACACA 608
consensus_3163#1      ----------