cluster # 3191

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Schistosoma mansoni
cluster # 3191 cluster # 3191 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3191#0 length = 429 sequences # 1

consensus_3191#1 length = 91 sequences # 1

consensusID : consensus_3191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [AGATTAATAGTACTTATTCATAAAGAATTCAACTATGAAAATTACAATCAATTAGATAAATAGATTACGTAACAACACAATGATAACCATATAGTCTAATCTTAGACGGTAAACAATTTTCATAGNATTGTTTTGTTATGATGACCTAGTAAACAAACAAACAAAACAAAATAACCACACTATCGAGTAAACAAAATTGTCCAAAGAAATAGACATACAAACTTATTTTTTTCTATCCAATTGTTCAAAAGTAACAGTAAACACACACACGCACGCACGCACACACATACATATTTACAAATTGAAATAAAAAAATTTTTTTGGCGAATACTTGGAAACAAAAATGTACAGTGGGAATAGTTGATTTTAATAAGATCATATGGTAAGAGAAACAATTGTGCTTTTCTATTTCGAACGAGATAAAAGAAA]

[+] EMBL CD069546             [AGATTAATAGTACTTATTCATAAAGAATTCAACTATGAAAATTACAATCAATTAGATAAATAGATTACGTAACAACACAATGATAACCATATAGTCTAATCTTAGACGGTAAACAATTTTCATAGNATTGTTTTGTTATGATGACCTAGTAAACAAACAAACAAAACAAAATAACCACACTATCGAGTAAACAAAATTGTCCAAAGAAATAGACATACAAACTTATTTTTTTCTATCCAATTGTTCAAAAGTAACAGTAAACACACACACGCACGCACGCACACACATACATATTTACAAATTGAAATAAAAAAATTTTTTTGGCGAATACTTGGAAACAAAAATGTACAGTGGGAATAGTTGATTTTAATAAGATCATATGGTAAGAGAAACAATTGTGCTTTTCTATTTCGAACGAGATAAAAGAAA]




>consensus_3191#0
AGATTAATAGTACTTATTCATAAAGAATTCAACTATGAAAATTACAATCAATTAGATAAA
TAGATTACGTAACAACACAATGATAACCATATAGTCTAATCTTAGACGGTAAACAATTTT
CATAGNATTGTTTTGTTATGATGACCTAGTAAACAAACAAACAAAACAAAATAACCACAC
TATCGAGTAAACAAAATTGTCCAAAGAAATAGACATACAAACTTATTTTTTTCTATCCAA
TTGTTCAAAAGTAACAGTAAACACACACACGCACGCACGCACACACATACATATTTACAA
ATTGAAATAAAAAAATTTTTTTGGCGAATACTTGGAAACAAAAATGTACAGTGGGAATAG
TTGATTTTAATAAGATCATATGGTAAGAGAAACAATTGTGCTTTTCTATTTCGAACGAGA
TAAAAGAAA

consensusID : consensus_3191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [ATGAAAATTGTWDACCGTCAAGATTATCTATATGGHTATCATTGTGTTGTTACGTAATCTATTTATCTAATTGATTGTAATTTCCATAGTT]

[+] EMBL AI395864             [ATGAAAATTGTWDACCGTCAAGATTATCTATATGGHTATCATTGTGTTGTTACGTAATCTATTTATCTAATTGATTGTAATTTCCATAGTT]




>consensus_3191#1
ATGAAAATTGTWDACCGTCAAGATTATCTATATGGHTATCATTGTGTTGTTACGTAATCT
ATTTATCTAATTGATTGTAATTTCCATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3191#0      AGATTAATAGTACTTATTCATAAAGAATTCAACTATGAAAATTACAATCAATTAGATAAA 60
consensus_3191#1      ----------------------------------ATGAAAATTGTWDACCGTCA---AGA 23
                                                        *********     *  * *   * *

consensus_3191#0      TAGATTACGTAACAACACAATG-ATAACCATATAGTCTAATC-TTAGACGGTAAACAATT 118
consensus_3191#1      TTATCTATATGGHTAT-CATTGTGTTGTTACGTAATCTATTTATCTAATTGATTGTAATT 82
                      *    **  *    *  ** **  *    *  ** **** *  *   *  *     ****

consensus_3191#0      TTCATAGNATTGTTTTGTTATGATGACCTAGTAAACAAACAAACAAAACAAAATAACCAC 178
consensus_3191#1      TCCATAGTT--------------------------------------------------- 91
                      * *****                                                     

consensus_3191#0      ACTATCGAGTAAACAAAATTGTCCAAAGAAATAGACATACAAACTTATTTTTTTCTATCC 238
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      AATTGTTCAAAAGTAACAGTAAACACACACACGCACGCACGCACACACATACATATTTAC 298
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      AAATTGAAATAAAAAAATTTTTTTGGCGAATACTTGGAAACAAAAATGTACAGTGGGAAT 358
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      AGTTGATTTTAATAAGATCATATGGTAAGAGAAACAATTGTGCTTTTCTATTTCGAACGA 418
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      GATAAAAGAAA 429
consensus_3191#1      -----------