These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAACTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATGTATATGATATACAATGGATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTAGCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTGAATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTGGCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGTCGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTTCGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGTGGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAATTAGGCCCACAAACATCAATGGAAGCATACAACGATG] [+] EMBL CD069595 [ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAACTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATGTATATGATATACAATGGATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTAGCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTGAATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTGGCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGTCGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTTCGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGTGGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAATTAGGCCCACAAACATCAATGGAAGCATACAACGATG] consensusID : consensus_3202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [AATGAACAGTCTTTCTAAACATCCAATAACGGGTCTTCGATGGTTATCTAATGAATGTATTGAGTTGTGCTCATTCATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTCGGTCGATTTTCTTCACCGGATGATCAGAATGATTTTAATCTAAATTCATCACAATTATCATTAAATAAGAACAATAAAGAAATCGATGTAGCTATAAAAATATTCATGTCGACTGAGAAACGTAGTTGGGAGACAGAAGTTGCACTTTTTAATGTTCCAGGTTTAGAACATATCAATATTCTACAATATTATGGTGCAGACCAGGTCATTGTGGATAATTCTATTGGCGAAGATAAACTAGAGTATTGGTTAGTAACAGAATATCATCC] [+] EMBL CD126244 [AATGAACAGTCTTTCTAAACATCCAATAACGGGTCTTCGATGGTTATCTAATGAATGTATTGAGTTGTGCTCATTCATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTCGGTCGATTTTCTTCACCGGATGATCAGAATGATTTTAATCTAAATTCATCACAATTATCATTAAATAAGAACAATAAAGAAATCGATGTAGCTATAAAAATATTCATGTCGACTGAGAAACGTAGTTGGGAGACAGAAGTTGCACTTTTTAATGTTCCAGGTTTAGAACATATCAATATTCTACAATATTATGGTGCAGACCAGGTCATTGTGGATAATTCTATTGGCGAAGATAAACTAGAGTATTGGTTAGTAACAGAATATCATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3202#0 ATCGCCTTGTATGGTGGTGCTGGCCAGGGTACATTGTGGATATCTATTGGCGAAGATAAA 60 consensus_3202#1 -----------------------------------------AATGAACAGTCTTTCTAAA 19 * * * **** consensus_3202#0 CTAGAGTATGGTTAGTAACAGAATATCATCCATTAGGCAGCGTATATGATTATCTTCATG 120 consensus_3202#1 C-ATCCAATAACGGGTCTTCGATGGTTATCTAATG---AATGTATTGAGTTGTGCTCATT 75 * * ** ** ** * *** * * * **** ** * **** consensus_3202#0 TATATGATATACAATGG-ATAGATTTATTAAAAATTTGTACTGGTCTTGCTCAAGGTTTA 179 consensus_3202#1 CATAAGGAAAGTTGAGTTAAAAGCTCACGGACGTTTTGGCCAAGTGTGGCTC--GGTCGA 133 *** * * * * * * * * **** * ** * **** *** * consensus_3202#0 GCTCATCTACATATGGAAATTCCAAATCTTTCAAAACCTAGTATAGCTCATCGTGATTTG 239 consensus_3202#1 TTTTCTTCAC---CGGATGATCAGAATGATTTTAATCTAAAT-----TCATCACAATTAT 185 * * ** *** ** *** ** ** * * * ***** *** consensus_3202#0 AATTCTCGTAATGTACTACTAAAGTCTGATCTTACTGCTTGTATTGCTGACTTCGGTTTG 299 consensus_3202#1 CATTAAATAAGAACAATAAAGAAATC-GATGTAGCTA-TAAAAATATTCATGTCGACTGA 243 *** * * ** ** ** *** * ** * * * * * *** * consensus_3202#0 GCAATTCGTTTCGAAGCTGGTCAGTGTATGAGAGATGCACATTTACAGTTGGGTACTCGT 359 consensus_3202#1 GAAACGTAGTTGGGAGACAGAAGTTGCACTT---TTTAATGTTCCAGGTTTAGAACATAT 300 * ** ** * ** * ** * * * ** *** * ** * consensus_3202#0 CGATATATGGCTCCTGAAGTGTTAGATGGCGCTATTCAGTTTTCAAAGGATGCATTTCTT 419 consensus_3202#1 CAATAT------TCTACAATATT--ATGGTGCAGACCAGGTCATTGTGGAT--AATTCT- 349 * **** ** * * ** **** ** *** * **** * **** consensus_3202#0 CGTATTGATGTTTATGCAATGGGTTTAGTGTTTTGGGAATTAATGATGAGATGTTGTTGT 479 consensus_3202#1 ---ATTGGCGAAGATAAA------CTAGAGTATTGG---TTAGTAACAGAATATCATCC- 396 **** * ** * *** ** **** *** * * ** * * consensus_3202#0 GGTTCTAATAAGAACGCAACAATTCATATTACTAATTATTTAGCACCATATGAAATAGAA 539 consensus_3202#1 ------------------------------------------------------------ consensus_3202#0 TTAGGCCCACAAACATCAATGGAAGCATACAACGATG 576 consensus_3202#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||