These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGAAAAATATTTGTTTTCTGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCACCACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTGTTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTGGTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTCATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATTGTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAAAACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATACATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTTC] [+] EMBL CD069628 [ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGAAAAATATTTGTTTTCTGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCACCACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTGTTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTGGTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTCATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATTGTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAAAACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATACATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTTC] consensusID : consensus_3208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACTCTACATTTCGCCACGACTTTCGTCCACAATTCCTCTAATTCTAATCTTTGATAGTAACGCTATTTCCACTGCGGCCTGTGACTGCTGTTCACAATGTTCATACCAATCCAATTAGCATTATTACTCAATGGTATCACTAGCTAGTTGTAAAAC] [+] EMBL CD083310 [AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACTCTACATTTCGCCACGACTTTCGTCCACAATTCCTCTAATTCTAATCTTTGATAGTAACGCTATTTCCACTGCGGCCTGTGACTGCTGTTCACAATGTTCATACCAATCCAATTAGCATTATTACTCAATGGTATCACTAGCTAGTTGTAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3208#0 ATATCAGTCTATTACTGCTCCACACAATCGTTTTTCTTAAACTTTCTACGTTTGTTTCGA 60 consensus_3208#1 ------AAGAATCGGCACGAGGTTTTCTCGCTTTTTTTCCACTT-CTAATTCAATTTGGG 53 ** * *** **** ** **** *** * *** * consensus_3208#0 AAAATATTTGTTTTC---TGCAATAATTATAATTTTTCTTGTTCTGTTTTCATTACTCAC 117 consensus_3208#1 ATATTAATAGATTTTACTTCCATAAATCAAAGCACTTATCGTACT--CTACATT--TCGC 109 * * ** * * *** * ** *** * * ** * ** ** * **** ** * consensus_3208#0 CACCATGTTATTGCTCTGCTTACAATTAATTTAATTTATTGTTTATTTAGAATGGAAGTG 177 consensus_3208#1 CACGACTTT-------CGTCCACAATTCCTCTAATT-----CTAATCTTTGATAGTAACG 157 *** * ** * ****** * ***** * ** * ** * * * consensus_3208#0 TTATTAGGTAAAAATGAAATCATTGTCAAGCATATATAACGTTATCTTTCAGATTAAGTG 237 consensus_3208#1 CTATTTC----CACTGCGGCCTGTGACTGCTGTTCACAATGTT-CATACCAATCCAATTA 212 **** * ** * ** * * * ** *** * ** ** * consensus_3208#0 GTTTTTATCTGATTATTTGGTTACATTATGACCTGAAAGGAGTGTAATCGTTTCTCTGTC 297 consensus_3208#1 GCATT------ATTACTCAATGGTATCACTAGCTAGTTGTAAAAC--------------- 251 * ** **** * * ** * * ** * * consensus_3208#0 ATCATATATACACACTCACATTTCATATTTCCCTGTTTAACTGAGGAACATTTCAGTATT 357 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 GTCTCTCACCGGTGCTGTCATGCTATATTATATTATATCCTGGAAATTTTTATTATCGAA 417 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 AACCTACTATATGTTGATTGCATGTAATTACTTCTTCTAACTCATCAAGCTGTGTTGATA 477 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 CATATCTTCTCGCTTTTTTTCCACTTCTAATTCAATTTGGGATATTACTAGATTTTACTT 537 consensus_3208#1 ------------------------------------------------------------ consensus_3208#0 C 538 consensus_3208#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||