cluster # 3219

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Schistosoma mansoni
cluster # 3219 cluster # 3219 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3219#0 length = 485 sequences # 1

consensus_3219#1 length = 361 sequences # 1

consensusID : consensus_3219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAACGTCAAACACTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATGAACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAGATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGCCTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTGGTTTAACCACA]

[+] EMBL CD069671             [TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAACGTCAAACACTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATGAACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAGATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGCCTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTGGTTTAACCACA]




>consensus_3219#0
TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAACGTCA
AACACTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTG
GTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAA
GAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAA
ACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATGAACGTG
TATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAGATGTGG
CTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGCCTGAGG
ATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTGGTTTAA
CCACA

consensusID : consensus_3219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAACGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATACATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAGA]

[+] EMBL CD181525             [TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAACGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCAGCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTCACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTACAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATACATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAGA]




>consensus_3219#1
TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAA
CGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCA
GCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTC
ACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTA
CAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATA
CATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAG
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3219#0      -----TGATATGGGCTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAAGGGACAA 55
consensus_3219#1      TTGATTGATATGGGTTTTGAAGAAGAAGTTCGAACTATATTTTCCTATTTTAGGGGACAA 60
                           ********* ************************************* *******

consensus_3219#0      CGTCAAACACTTT-GTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCA 114
consensus_3219#1      CGTCAAACACTTTTGTTCTCTGCTACTATGCCAAAGAAAATACAAAATTTCGCCAAATCA 120
                      ************* **********************************************

consensus_3219#0      GCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTC 174
consensus_3219#1      GCCTTGGTAAAACCTGTCACTGTTAATGTTGGCCGAGCTGGAGCGGCTAGTATGAATGTC 180
                      ************************************************************

consensus_3219#0      ACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTA 234
consensus_3219#1      ACTCAAGAAGTGGAATATGTAAAACATGAAGCGAAAATTCCTCATTTACTTAGTGCTTTA 240
                      ************************************************************

consensus_3219#0      CAGAAAACTCCACCTCCTGTGTTGAAGCAGTTAGTATTCATGGTGGAAAAGATCAAGATG 294
consensus_3219#1      CAGAAAACTCCACCTCCTGTTATTATATTTGCTGAGCGTAAACAAGATGTGGATGCTATA 300
                      ********************  * *        *     *     **   *      ** 

consensus_3219#0      AACGTGTATCAGCTGTTACAGAATTTAGAGCTCATCATCGTGATGTCTTAGTTGCTACAG 354
consensus_3219#1      CATGAATATCTTCTTTTGAAAGGTGTTGAGCAGTTAGTATTCATGGTGGAAAAGATCAAG 360
                       * *  ****  ** **  *   * * ****   *  *  * ***    *   * *  **

consensus_3219#0      ATGTGGCTAGTAAAGGTTTGGATTTTCCAGAAATTAATCACGTAATCAACTACGATATGC 414
consensus_3219#1      A----------------------------------------------------------- 361
                      *                                                           

consensus_3219#0      CTGAGGATATTGAAAATTATGTACATCGCATCGGTCGTACTGGTCGTGGTCATCAACGTG 474
consensus_3219#1      ------------------------------------------------------------
                                                                                  

consensus_3219#0      GTTTAACCACA 485
consensus_3219#1      -----------