cluster # 322

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Schistosoma mansoni
cluster # 322 cluster # 322 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_322#0 length = 190 sequences # 1

consensus_322#1 length = 179 sequences # 1

consensusID : consensus_322#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACTCAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTTGAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATAATTCACATGA]

[+] EMBL CD182925             [ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACTCAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTTGAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATAATTCACATGA]




>consensus_322#0
ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACT
CAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTT
GAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATA
ATTCACATGA

consensusID : consensus_322#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACTCAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTCGAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT]

[-] EMBL CD190015             [ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACTCAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTCGAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT]




>consensus_322#1
ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACT
CAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTC
GAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_322#0      ACCGAGTATGCCTGAAATGAGTGATTCGCATAGCAGAAGCTGTAATTAGTGTTCTGGACT 60
consensus_322#1      ACCGAGTATGCTTCAACTAAATGATTCGCATAGCAGAAGCTGTAATTGGTGTTCTGGACT 60
                     *********** * ** * * ************************** ************

consensus_322#0      CAATTGGAAGGGCTCGGCGAACAATCAACCAAAAAGGACGCTAGACTGCTCATACTGGTT 120
consensus_322#1      CAATTGGAAGGGTCAGGCAGACAAGGGACCAATAAGGACGCTAGACTACTCATACTGGTC 120
                     ************   ***  ****   ***** ************** *********** 

consensus_322#0      GAACGTCATTGATTTGGTACAGTGTTAAGATTAGAAAGGTCGTATTTCGATTGGTGGATA 180
consensus_322#1      GAACGTCATTGATTTGGCACAGTGTTAAGATAGGAAAAGTCGTATTTCGATTGATGGAT- 179
                     ***************** *************  **** *************** ***** 

consensus_322#0      ATTCACATGA 190
consensus_322#1      ----------