cluster # 3220

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Schistosoma mansoni
cluster # 3220 cluster # 3220 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3220#0 length = 495 sequences # 1

consensus_3220#1 length = 483 sequences # 1

consensusID : consensus_3220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [TGTCTNTGTGTCACTGTTGTCTTTACCGATTTGAAACAATACATTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTATTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGTCAACATTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTAGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATATCCCATCTTTCCACTGGATTACGATACGCTCTCATAGTATGCCTTAAAAATATTGTATTAGTTATAAATGATGTAATTGAAAGAAATGGCTTTGTTTGAGATGGTATATTATGACCAATACTAGTTAGTCCAAAAGTGCCCATTTCTTTAGTATCACCAGATCTCAATACATTGCTTGGGATTGGTATAGGATAATTTATCAATTTTGGGAGC]

[+] EMBL CD150500             [TGTCTNTGTGTCACTGTTGTCTTTACCGATTTGAAACAATACATTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTATTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGTCAACATTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTAGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATATCCCATCTTTCCACTGGATTACGATACGCTCTCATAGTATGCCTTAAAAATATTGTATTAGTTATAAATGATGTAATTGAAAGAAATGGCTTTGTTTGAGATGGTATATTATGACCAATACTAGTTAGTCCAAAAGTGCCCATTTCTTTAGTATCACCAGATCTCAATACATTGCTTGGGATTGGTATAGGATAATTTATCAATTTTGGGAGC]




>consensus_3220#0
TGTCTNTGTGTCACTGTTGTCTTTACCGATTTGAAACAATACATTCAATAGATATGATGC
CCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTATTATCACCGCTAACAAC
ACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGTCAACATTTTTTCATGA
CTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTAGACGATTTAAAAAATCA
TGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATATCCCATCTTTCCACTGGA
TTACGATACGCTCTCATAGTATGCCTTAAAAATATTGTATTAGTTATAAATGATGTAATT
GAAAGAAATGGCTTTGTTTGAGATGGTATATTATGACCAATACTAGTTAGTCCAAAAGTG
CCCATTTCTTTAGTATCACCAGATCTCAATACATTGCTTGGGATTGGTATAGGATAATTT
ATCAATTTTGGGAGC

consensusID : consensus_3220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CCAAATGTCTATGTAGGCCTACTTCTAAAAGACCCGTAACCATTCTGAATAAAGATGAATCCGTTAACAATTGAGTAGCAAGATGATAGCCTGGATCAGTGTATGGCCAACCAACAGGTAAATGCAATTGACTTATTATTGTTTCTAATGAACTGATTGATGATGGCAATGTAGCATGTAAATGATGACCATGAATTGGTTGTTGCTGCTGTTGTTCTTTACCGATTTGAAACAATACATTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTATTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGTCAACATTTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTAGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATATCCC]

[-] EMBL CD116641             [CCAAATGTCTATGTAGGCCTACTTCTAAAAGACCCGTAACCATTCTGAATAAAGATGAATCCGTTAACAATTGAGTAGCAAGATGATAGCCTGGATCAGTGTATGGCCAACCAACAGGTAAATGCAATTGACTTATTATTGTTTCTAATGAACTGATTGATGATGGCAATGTAGCATGTAAATGATGACCATGAATTGGTTGTTGCTGCTGTTGTTCTTTACCGATTTGAAACAATACATTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTATTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGTCAACATTTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTAGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATATCCC]




>consensus_3220#1
CCAAATGTCTATGTAGGCCTACTTCTAAAAGACCCGTAACCATTCTGAATAAAGATGAAT
CCGTTAACAATTGAGTAGCAAGATGATAGCCTGGATCAGTGTATGGCCAACCAACAGGTA
AATGCAATTGACTTATTATTGTTTCTAATGAACTGATTGATGATGGCAATGTAGCATGTA
AATGATGACCATGAATTGGTTGTTGCTGCTGTTGTTCTTTACCGATTTGAAACAATACAT
TCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTAT
TATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTGT
CAACATTTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTTA
GACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATAT
CCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3220#0      ------------------------------------------------------------
consensus_3220#1      CCAAATGTCTATGTAGGCCTACTTCTAAAAGACCCGTAACCATTCTGAATAAAGATGAAT 60
                                                                                  

consensus_3220#0      ------------------------------------------------------------
consensus_3220#1      CCGTTAACAATTGAGTAGCAAGATGATAGCCTGGATCAGTGTATGGCCAACCAACAGGTA 120
                                                                                  

consensus_3220#0      ------------------------------------------------------------
consensus_3220#1      AATGCAATTGACTTATTATTGTTTCTAATGAACTGATTGATGATGGCAATGTAGCATGTA 180
                                                                                  

consensus_3220#0      ----------------TGTCTNTGTGTCACTGTTGT-CTTTACCGATTTGAAACAATACA 43
consensus_3220#1      AATGATGACCATGAATTGGTTGT-TGCTGCTGTTGTTCTTTACCGATTTGAAACAATACA 239
                                      **  * * **   ******* ***********************

consensus_3220#0      TTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTA 103
consensus_3220#1      TTCAATAGATATGATGCCCAATCAACGGATTGACCGCTGACCACATTAGGATTTTGTTTA 299
                      ************************************************************

consensus_3220#0      TTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTG 163
consensus_3220#1      TTATCACCGCTAACAACACCAGTAGAAGTAGATACAGTAGTGAATAATGCATCTAAATTG 359
                      ************************************************************

consensus_3220#0      TCAACATTTTTT-CATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTT 222
consensus_3220#1      TCAACATTTTTTTCATGACTAGAAGACATCATAGTTGTAATAATAGCTGTCGCATTATTT 419
                      ************ ***********************************************

consensus_3220#0      AGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATA 282
consensus_3220#1      AGACGATTTAAAAAATCATGAACAAGTCCATCGAATAGAATTAGACAAGATGCAGCAATA 479
                      ************************************************************

consensus_3220#0      TCCCATCTTTCCACTGGATTACGATACGCTCTCATAGTATGCCTTAAAAATATTGTATTA 342
consensus_3220#1      TCCC-------------------------------------------------------- 483
                      ****                                                        

consensus_3220#0      GTTATAAATGATGTAATTGAAAGAAATGGCTTTGTTTGAGATGGTATATTATGACCAATA 402
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      CTAGTTAGTCCAAAAGTGCCCATTTCTTTAGTATCACCAGATCTCAATACATTGCTTGGG 462
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      ATTGGTATAGGATAATTTATCAATTTTGGGAGC 495
consensus_3220#1      ---------------------------------