cluster # 3236

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Schistosoma mansoni
cluster # 3236 cluster # 3236 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3236#0 length = 294 sequences # 1

consensus_3236#1 length = 229 sequences # 1

consensusID : consensus_3236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACCCCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAATCCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAACTTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA]

[+] EMBL CD116761             [CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACCCCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAATCCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAACTTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA]




>consensus_3236#0
CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACC
CCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAAT
CCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAAC
TTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATA
AAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA

consensusID : consensus_3236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [CACCAAGTTTACATAAAGCAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTAGCAATTACAATTGTATCTAATGCAATTGTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAGTAATAGACCATCGAAAACCCCTTCTTGAGAAATTATTCCTGA]

[-] EMBL CD130780             [CACCAAGTTTACATAAAGCAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTAGCAATTACAATTGTATCTAATGCAATTGTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAGTAATAGACCATCGAAAACCCCTTCTTGAGAAATTATTCCTGA]




>consensus_3236#1
CACCAAGTTTACATAAAGCAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGT
ATAATGATTGTAATAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTAT
GTGTAGCAATTACAATTGTATCTAATGCAATTGTCTGATAAAGTTTATTCTCGCATTGTG
TAAGAAGTAATAGACCATCGAAAACCCCTTCTTGAGAAATTATTCCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3236#0      CAAAGAGTATCATACCAGAACGGAATAGCTTTTTAGTGCTCTCTGGTTTTTAATGGCACC 60
consensus_3236#1      ----------------------------------------CACCAAGTTTACATAAAGCA 20
                                                              * *    ***  **    * 

consensus_3236#0      CCAAATGACGATCAATCTGTGATGAATACAACTTGGAAAATAAACTAATCTCCACAAAAT 120
consensus_3236#1      ACAAGTG-CG--CGAATTCTAGT-ACCATCATTTTCACTTTTGTATAATGATTGTAATAA 76
                       *** ** **  * *  * *  * *  *  * **  *   *    ****      ** * 

consensus_3236#0      CCATTCAACTAAAGAACTTATTTGTAAAAATAAAATGTTAAAATTGTTTGTAAAAATAAC 180
consensus_3236#1      AGGAACAGCTTTAGAAATTATACTTAAACATTGT-TGTTT--CTTATGTGTAGCAATTAC 133
                           ** **  **** ****   **** **    ****    ** * ****  *** **

consensus_3236#0      --TTACAACAAGTGCGCGAATTCTAGTACCATCATTTTCACTTTTGTATAATGATTGTAA 238
consensus_3236#1      AATTGTATCTAATGC---AATT---GTCTGATAAAGTTTATTCTCGCATTGTGTAAGAAG 187
                        **  * * * ***   ****   **   ** *  ** * * * * **  **   * * 

consensus_3236#0      TAAAGGAACAGCTTTAGAAATTATACTTAAACATTGTTGTTTCTTATGTGTGGCAA 294
consensus_3236#1      TAATAGACCA--TCGAAAACCCCTTCTTGAGAA--ATTATTCCTGA---------- 229
                      ***  ** **  *  * **    * *** *  *   ** ** ** *