cluster # 3262

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Schistosoma mansoni
cluster # 3262 cluster # 3262 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3262#0 length = 361 sequences # 1

consensus_3262#1 length = 89 sequences # 1

consensusID : consensus_3262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [GACCAATACAACATCTGAGTCTAAGGAAGGTGTTGTCACTTTTTTGATATTGTCTAGTTGTGTCAGAACTCCTGGAAAGTTGGCAGCTGGAATTACAGCGATGAATGTATCATGCATTTCTGATTGCTTTGGTTTAATGGAAAACTTGATCACCTTCCCTTGTGAACTATTCATTGTTATATTGGCGGTATCTAAAGATAAATGCCAAAACCGTAAACTCTTTTCAGTTTCTTTCCCGGATCTTAATAAATCGATAACAGAAGGGGTTTGGCGGGCGATTTCCGCGATTAAATGGAGAAATACGGAGACTGTTTTTAGTTTTTTGGAAGTTGAAGTTGACAGAAATTCAGAATTCGCAGTA]

[+] EMBL CD191621             [GACCAATACAACATCTGAGTCTAAGGAAGGTGTTGTCACTTTTTTGATATTGTCTAGTTGTGTCAGAACTCCTGGAAAGTTGGCAGCTGGAATTACAGCGATGAATGTATCATGCATTTCTGATTGCTTTGGTTTAATGGAAAACTTGATCACCTTCCCTTGTGAACTATTCATTGTTATATTGGCGGTATCTAAAGATAAATGCCAAAACCGTAAACTCTTTTCAGTTTCTTTCCCGGATCTTAATAAATCGATAACAGAAGGGGTTTGGCGGGCGATTTCCGCGATTAAATGGAGAAATACGGAGACTGTTTTTAGTTTTTTGGAAGTTGAAGTTGACAGAAATTCAGAATTCGCAGTA]




>consensus_3262#0
GACCAATACAACATCTGAGTCTAAGGAAGGTGTTGTCACTTTTTTGATATTGTCTAGTTG
TGTCAGAACTCCTGGAAAGTTGGCAGCTGGAATTACAGCGATGAATGTATCATGCATTTC
TGATTGCTTTGGTTTAATGGAAAACTTGATCACCTTCCCTTGTGAACTATTCATTGTTAT
ATTGGCGGTATCTAAAGATAAATGCCAAAACCGTAAACTCTTTTCAGTTTCTTTCCCGGA
TCTTAATAAATCGATAACAGAAGGGGTTTGGCGGGCGATTTCCGCGATTAAATGGAGAAA
TACGGAGACTGTTTTTAGTTTTTTGGAAGTTGAAGTTGACAGAAATTCAGAATTCGCAGT
A

consensusID : consensus_3262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 89
fasta sequence

                              [GACAACACNCTTCCTTAGACCTCAGATGTTGTATTGGTCGACACAAACAACGGTCTATCTTTCACTCTATCTGTGGATTTATCTCAGGT]

[+] EMBL CD166592             [GACAACACNCTTCCTTAGACCTCAGATGTTGTATTGGTCGACACAAACAACGGTCTATCTTTCACTCTATCTGTGGATTTATCTCAGGT]




>consensus_3262#1
GACAACACNCTTCCTTAGACCTCAGATGTTGTATTGGTCGACACAAACAACGGTCTATCT
TTCACTCTATCTGTGGATTTATCTCAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3262#0      GACCAATACAACATCTGAGTCTAAGGAAGGTGTTGTCACTTTTTTGATATTGTCTAGTTG 60
consensus_3262#1      ------------------------------------------------------------
                                                                                  

consensus_3262#0      TGTCAGAACTCCTGGAAAGTTGGCAGCTGGAATTACAGCGATGAATGTATCATGCATTTC 120
consensus_3262#1      ------------------------------------------------------------
                                                                                  

consensus_3262#0      TGATTGCTTTGGTTTAATGGAAAACTTGATCACCTTCCCTTGTGAACTATTCATTGTTAT 180
consensus_3262#1      ---------------------------GACAACACNCTTCCTTAGACC-TCAGATGTTGT 32
                                                 **  **   *     *  **  *    **** *

consensus_3262#0      ATTGGCGGTATCTAAAGATAAATGCCAAAACCGTAAACTCTTTTCAGTTTCTTTCCCGGA 240
consensus_3262#1      ATTGGTCG---ACACAAACAACGGTCTATCTTTCACTCTATCTGTGGATT-TATCTCAGG 88
                      *****  *     * * * **  * * *      *  ** * *   * ** * ** * * 

consensus_3262#0      TCTTAATAAATCGATAACAGAAGGGGTTTGGCGGGCGATTTCCGCGATTAAATGGAGAAA 300
consensus_3262#1      T----------------------------------------------------------- 89
                      *                                                           

consensus_3262#0      TACGGAGACTGTTTTTAGTTTTTTGGAAGTTGAAGTTGACAGAAATTCAGAATTCGCAGT 360
consensus_3262#1      ------------------------------------------------------------
                                                                                  

consensus_3262#0      A 361
consensus_3262#1      -