These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTACGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAGTGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTAGAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGCTAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCAAAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGGTAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAACTAGTGCTTCAAATAT] [+] EMBL CD138204 [TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTACGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAGTGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTAGAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGCTAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCAAAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGGTAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAACTAGTGCTTCAAATAT] consensusID : consensus_327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence [GATTTACAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAGTGTTCAGTGAATGGTGTGAAGTTGGTACC] [-] EMBL CD166566 [GATTTACAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAACTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAGTGTTCAGTGAATGGTGTGAAGTTGGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_327#0 TTAGTTTACTTTTTTGGTACGTTTTTCAATGACAGACGCAGTCAAAAACCTGATGATTTA 60 consensus_327#1 ------------------------------------------------------GATTTA 6 ****** consensus_327#0 CGGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAA 120 consensus_327#1 CAGATTCATCTACCCAGTCACATTAGGTCCAGTCTGGACTTAGTATATGCCTATTTTGAA 66 * ********************************************************** consensus_327#0 CTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGGTTCAG 180 consensus_327#1 CTCCAATTAGATGGTAAAACAGACCACTTAATGTGAAGTAGGGATCAAACTCTGTTACAG 126 ****************************************************** * *** consensus_327#0 TGTTCAGTCTAATAAAACTCACTGAAAGTATTATTTAGCTATTACAATAGATGGCTAGTA 240 consensus_327#1 TGTTCAGT------GAATGGTGTGAAGTTGGTACC------------------------- 155 ******** ** **** * ** consensus_327#0 GAAGTTGATACTAGTAGTTGACAAAAATTACCAATTTACACACAAAAAATCCTTCTGGGC 300 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TAAAACAACCGAGTTTACGAAAACCATTAAGATTTGTTTTTAAGACTATGAAGAACTGCA 360 consensus_327#1 ------------------------------------------------------------ consensus_327#0 AAATAGTTGTTAAAAGCTTTTAAATAATGTAATCTCTTCAGAAACCCTTTGGAAATTCGG 420 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TAAGACTGTTTTCTTATTTCACCATATATCATGGTGTATGTGAGAATACAGGCAAAGAAC 480 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TAGTGCTTCAAATAT 495 consensus_327#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||