cluster # 3288

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Schistosoma mansoni
cluster # 3288 cluster # 3288 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3288#0 length = 410 sequences # 1

consensus_3288#1 length = 344 sequences # 1

consensusID : consensus_3288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TTAATTGAGGTGAAGTCCCAGGTCTTTGAACACTCTTCTTTTTGGAAGATAAGCTTGAAAAAGACGGGATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCGAAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAGCCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTTTGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAAAGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAACTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC]

[+] EMBL CD197115             [TTAATTGAGGTGAAGTCCCAGGTCTTTGAACACTCTTCTTTTTGGAAGATAAGCTTGAAAAAGACGGGATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCGAAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAGCCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTTTGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAAAGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAACTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC]




>consensus_3288#0
TTAATTGAGGTGAAGTCCCAGGTCTTTGAACACTCTTCTTTTTGGAAGATAAGCTTGAAA
AAGACGGGATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCGAAGTTT
TCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAGCCTTTG
TATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTTTGATCT
TTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAAAGCTGT
CATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAACTGATT
TCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC

consensusID : consensus_3288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCATTAAAGAAGATACTGAAATTAGTTGTTTCTGAGTTGACATTTTTTCAATATGAATTATTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTCATGCCCAAAAGTTGTGAAATTAATTCAGTTTCTATTTTGATGAACCCAGAAATTTGAGAAGAAATTCGCTATCCGGGCCTCCACCGAAGATGGCGAAAACTTCGGTTGGTAACAATGTGAGTTGTATTGGCTTCACGCCTGTTGTTTAAAAATAAGATATACTGTTTCTTGATAACATAATTA]

[+] EMBL CD202120             [ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCATTAAAGAAGATACTGAAATTAGTTGTTTCTGAGTTGACATTTTTTCAATATGAATTATTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTCATGCCCAAAAGTTGTGAAATTAATTCAGTTTCTATTTTGATGAACCCAGAAATTTGAGAAGAAATTCGCTATCCGGGCCTCCACCGAAGATGGCGAAAACTTCGGTTGGTAACAATGTGAGTTGTATTGGCTTCACGCCTGTTGTTTAAAAATAAGATATACTGTTTCTTGATAACATAATTA]




>consensus_3288#1
ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCAT
TAAAGAAGATACTGAAATTAGTTGTTTCTGAGTTGACATTTTTTCAATATGAATTATTTA
TTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTCATGCCCAAAAGTTGTGAAA
TTAATTCAGTTTCTATTTTGATGAACCCAGAAATTTGAGAAGAAATTCGCTATCCGGGCC
TCCACCGAAGATGGCGAAAACTTCGGTTGGTAACAATGTGAGTTGTATTGGCTTCACGCC
TGTTGTTTAAAAATAAGATATACTGTTTCTTGATAACATAATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3288#0      TTAATTGAGGTGAAGTCCCAGGTCT-TTGAACA---CTCTTCTTTTTGGAAGATAAGC-T 55
consensus_3288#1      ACAATAACGGTGTTTCCCAAAGCGGATTACATATATCTGTACTCGTTAAATGGGATGCAT 60
                        ***   ****    ** * *    **  * *   ** * **  **  * *  * ** *

consensus_3288#0      TGAAAAAGACGG-GATGTTAGGTGGAATATCTGAGTTTCGTGTCTTATTGTTACCAACCG 114
consensus_3288#1      TAAAGAAGATACTGAAATTAGTTG---TTTCTGAGTTG-ACATTTTTTCAATATGAATTA 116
                      * ** ****    **  **** **   * ********     * ** *   **  **   

consensus_3288#0      AAGTTTTCGCCATCTTCGGTGGAGGCCCGGATAGCGAATTTCTTCTCAAATTTTTTCTAG 174
consensus_3288#1      TTTATTAGAGGCTTTTGTACTGCAGCCTAGGAATTAAGAAGCTTC----ATGCCCAAAAG 172
                          **      * **     *  ***  *  *   *    ****    **       **

consensus_3288#0      CCTTTGTATTGCGTTCGTCTTTAATTAAAGAAGCCGATTTTAACTGATAGTCAAGAGCTT 234
consensus_3288#1      TTGTGAAATTAATTCAGTTTCTATTTTGATGAACC-----CAGAAATTTGAGAAGAAATT 227
                         *   ***   *  ** * ** **  *  * **      *     * *  ****  **

consensus_3288#0      TGATCTTTTGTTGGCGACTGTTTTCCACTTCCTTAACAAGATTTTCACGTGCTTTAACAA 294
consensus_3288#1      CGCTATCCGG---------GCCTCCACCGAAGATGGCGAAAACTTCGGTTGGT--AACAA 276
                       * * *   *         *  * *  *     *  * * *  ***   ** *  *****

consensus_3288#0      AGCTGTCATCAGTGGCTTTAGTTCTGTATCTATACTGGATATTCTGTAGACACTTTCCAA 354
consensus_3288#1      TGTGAGTTGTATTGGCTTCACGCCTGTTGTT----TAAAAATAAGATATACTGTTTCTTG 332
                       *        * ****** *   ****   *    *  * **    ** **  ****   

consensus_3288#0      CTGATTTCTTAACATTGACGAGCGAGAAATATACTGTACCATGGTCGGGTTCGAGC 410
consensus_3288#1      ATAACATAATTA-------------------------------------------- 344
                       * *  *  * *