cluster # 3297

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Schistosoma mansoni
cluster # 3297 cluster # 3297 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3297#0 length = 527 sequences # 1

consensus_3297#1 length = 319 sequences # 1

consensusID : consensus_3297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TCACGAACTGATATAAGCTATAATGCCAATACGATACTTGGCCGTGTGGATGAATGAAAATTGCTCACAACTCCGGGACTTGCTATCTGTAATTTCATTGGTTCGTCCATAGGTTACGCTCTCACCAGCGACACATACTTGCACCCTCGTTAATGTTTGTATGATAATCTGCTACTTGATTTATTTTACAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATGTTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATGTTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTCCTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGTATTAAAAGTTATTAACTCAATTATGATTGCTTTGTAGGTTACGATGCCCCAAGGTCTCAATATATTTAGTCAAAGTAGCCCATTATTTAGCCGGTTTCATTTGCCTCAAAGACATACT]

[+] EMBL CD189058             [TCACGAACTGATATAAGCTATAATGCCAATACGATACTTGGCCGTGTGGATGAATGAAAATTGCTCACAACTCCGGGACTTGCTATCTGTAATTTCATTGGTTCGTCCATAGGTTACGCTCTCACCAGCGACACATACTTGCACCCTCGTTAATGTTTGTATGATAATCTGCTACTTGATTTATTTTACAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATGTTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATGTTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTCCTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGTATTAAAAGTTATTAACTCAATTATGATTGCTTTGTAGGTTACGATGCCCCAAGGTCTCAATATATTTAGTCAAAGTAGCCCATTATTTAGCCGGTTTCATTTGCCTCAAAGACATACT]




>consensus_3297#0
TCACGAACTGATATAAGCTATAATGCCAATACGATACTTGGCCGTGTGGATGAATGAAAA
TTGCTCACAACTCCGGGACTTGCTATCTGTAATTTCATTGGTTCGTCCATAGGTTACGCT
CTCACCAGCGACACATACTTGCACCCTCGTTAATGTTTGTATGATAATCTGCTACTTGAT
TTATTTTACAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATG
TTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATG
TTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTC
CTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGTATTAAAAGTTA
TTAACTCAATTATGATTGCTTTGTAGGTTACGATGCCCCAAGGTCTCAATATATTTAGTC
AAAGTAGCCCATTATTTAGCCGGTTTCATTTGCCTCAAAGACATACT

consensusID : consensus_3297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [GCTCATGTACAATCGATTGACAAGCGATTTTAGAGAAGTCGTGACAATTAAGCGGGTACAATAAATGGGACTACTAAGAAACTCCTTTATTTGTAAATGAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATGTTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATGTTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTCCTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGT]

[-] EMBL CD147952             [GCTCATGTACAATCGATTGACAAGCGATTTTAGAGAAGTCGTGACAATTAAGCGGGTACAATAAATGGGACTACTAAGAAACTCCTTTATTTGTAAATGAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATGTTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATGTTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTCCTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGT]




>consensus_3297#1
GCTCATGTACAATCGATTGACAAGCGATTTTAGAGAAGTCGTGACAATTAAGCGGGTACA
ATAAATGGGACTACTAAGAAACTCCTTTATTTGTAAATGAGGACTCGCTAGCTATGTGCT
CTGCAGAGCAGGTAATTGATTACTTTTATGTTTGCGGCGTAGATTATGGAGTTGGCCTAG
AGAGCTTTAACTCAGGTGAAAAACGTGATGTTTGTCTTGATATTCCTCCTCTAAAGCGGC
CCTACAAGTGCCATGTTCTTCAACATTTTCCTGAATATTCTCCAAATTGTCCTTTTGATG
AGGAGTCCACTGCACTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3297#0      TCACGAACTGATATAAGCTATAATGCCAATACGATACTTGGCCGTGTGGATGAATGAAAA 60
consensus_3297#1      ------------------------------------------------------------
                                                                                  

consensus_3297#0      TTGCTCACAACTCCGGGACTTGCTATCTGTAATTTCATTGGTTCGTCCATAGGTTACGCT 120
consensus_3297#1      --------------------------GCTCATGTACAATCGATTGACAAGCGATTTTAGA 34
                                                    *  * ** * * * * * *  * **     

consensus_3297#0      CTCACCAGCGACACATACTTGCACCCTCGTTAATGTTTGTATGATAATCTGCTACTTGAT 180
consensus_3297#1      GAAGTC-GTGACAATTAAGCGGGTACA-ATAAATG--GGACTACTAAGAAACTCCTTTAT 90
                           * * ****  **   *    *   * ****   *  *  ***    ** *** **

consensus_3297#0      TTATTTTACAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATG 240
consensus_3297#1      TTGTAAATGAGGACTCGCTAGCTATGTGCTCTGCAGAGCAGGTAATTGATTACTTTTATG 150
                      ** *     ***************************************************

consensus_3297#0      TTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATG 300
consensus_3297#1      TTTGCGGCGTAGATTATGGAGTTGGCCTAGAGAGCTTTAACTCAGGTGAAAAACGTGATG 210
                      ************************************************************

consensus_3297#0      TTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTC 360
consensus_3297#1      TTTGTCTTGATATTCCTCCTCTAAAGCGGCCCTACAAGTGCCATGTTCTTCAACATTTTC 270
                      ************************************************************

consensus_3297#0      CTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGTATTAAAAGTTA 420
consensus_3297#1      CTGAATATTCTCCAAATTGTCCTTTTGATGAGGAGTCCACTGCACTGGT----------- 319
                      *************************************************           

consensus_3297#0      TTAACTCAATTATGATTGCTTTGTAGGTTACGATGCCCCAAGGTCTCAATATATTTAGTC 480
consensus_3297#1      ------------------------------------------------------------
                                                                                  

consensus_3297#0      AAAGTAGCCCATTATTTAGCCGGTTTCATTTGCCTCAAAGACATACT 527
consensus_3297#1      -----------------------------------------------