cluster # 3354

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Schistosoma mansoni
cluster # 3354 cluster # 3354 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3354#0 length = 174 sequences # 1

consensus_3354#1 length = 174 sequences # 1

consensusID : consensus_3354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [AAAATTAATTGACGAAAGAATAATATTTTTTCATTGAATGGGACATTTACTTGTCCAGGGGCTTGTTCTACGGCTAACATATATAATGCTACGTCACGTTTTTCCACAAATTCCATGATTAATTTAACTACATCTGCTTCGTATATTGAAAGTTGAACTTTCTCATGTTTTGGT]

[+] EMBL CD167066             [AAAATTAATTGACGAAAGAATAATATTTTTTCATTGAATGGGACATTTACTTGTCCAGGGGCTTGTTCTACGGCTAACATATATAATGCTACGTCACGTTTTTCCACAAATTCCATGATTAATTTAACTACATCTGCTTCGTATATTGAAAGTTGAACTTTCTCATGTTTTGGT]




>consensus_3354#0
AAAATTAATTGACGAAAGAATAATATTTTTTCATTGAATGGGACATTTACTTGTCCAGGG
GCTTGTTCTACGGCTAACATATATAATGCTACGTCACGTTTTTCCACAAATTCCATGATT
AATTTAACTACATCTGCTTCGTATATTGAAAGTTGAACTTTCTCATGTTTTGGT

consensusID : consensus_3354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [CAAATTAATTGACGAAAGAATAATATGTTTTCATTGAATGGTCCATTTACTTGTGCAGGGGGTTGTTCTACGGCTAACATACAGATTGCTAGGTCACGTTTTTCCAGAAATTCCAAGATTAATTTAACTACATCTGCTTCGTATATCGTTAGTCGAACTTTCTCATGTTTTGGT]

[+] EMBL CD167067             [CAAATTAATTGACGAAAGAATAATATGTTTTCATTGAATGGTCCATTTACTTGTGCAGGGGGTTGTTCTACGGCTAACATACAGATTGCTAGGTCACGTTTTTCCAGAAATTCCAAGATTAATTTAACTACATCTGCTTCGTATATCGTTAGTCGAACTTTCTCATGTTTTGGT]




>consensus_3354#1
CAAATTAATTGACGAAAGAATAATATGTTTTCATTGAATGGTCCATTTACTTGTGCAGGG
GGTTGTTCTACGGCTAACATACAGATTGCTAGGTCACGTTTTTCCAGAAATTCCAAGATT
AATTTAACTACATCTGCTTCGTATATCGTTAGTCGAACTTTCTCATGTTTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3354#0      AAAATTAATTGACGAAAGAATAATATTTTTTCATTGAATGGGACATTTACTTGTCCAGGG 60
consensus_3354#1      CAAATTAATTGACGAAAGAATAATATGTTTTCATTGAATGGTCCATTTACTTGTGCAGGG 60
                       ************************* **************  *********** *****

consensus_3354#0      GCTTGTTCTACGGCTAACATATATAATGCTACGTCACGTTTTTCCACAAATTCCATGATT 120
consensus_3354#1      GGTTGTTCTACGGCTAACATACAGATTGCTAGGTCACGTTTTTCCAGAAATTCCAAGATT 120
                      * ******************* * * ***** ************** ******** ****

consensus_3354#0      AATTTAACTACATCTGCTTCGTATATTGAAAGTTGAACTTTCTCATGTTTTGGT 174
consensus_3354#1      AATTTAACTACATCTGCTTCGTATATCGTTAGTCGAACTTTCTCATGTTTTGGT 174
                      ************************** *  *** ********************