cluster # 3372

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Schistosoma mansoni
cluster # 3372 cluster # 3372 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3372#0 length = 656 sequences # 1

consensus_3372#1 length = 425 sequences # 1

consensusID : consensus_3372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT]

[+] EMBL CD080293             [AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGCCAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTTCCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTTCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTTGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGTTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT]




>consensus_3372#0
AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGC
CAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTT
CCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCA
AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG
ACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGA
TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA
TTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAAAAGTT
CATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATTT
GGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGTA
TGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTGT
TTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT

consensusID : consensus_3372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT]

[+] EMBL CD071424             [TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATATGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAAACAAT]




>consensus_3372#1
TGGAATTGTCAATCAATCAATCTCAAGTCCATCAGGTACACTCACATCTACGCTGCCTAA
AACAACATTATTGAATGAAGTAGTGACAAGTTCACATCCTGTTACTTCAGTAACAATGAA
ATCATCTGGTTCAGAGACTAGTGGATTAGAATTTCTTTATCTTATACGCCATCTTATTAT
GTCACTTAGTGTATTAATGGTTCAATTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGT
GAGTTAAATAAATTTTTTTATGAAATGATATCCGAAATATTATGTATACTTATGTATATA
TGTTATTAGTTCATAAATTTTACGGAACCATCTTATTATAATCATGTTATATTTTACACC
TAATTAAGACAAAGATTGTAAGTGTGAATTCTACAATTTGTTCGAATTCAACGCAATAAA
ACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3372#0      AGGTATGGTCCTACTGTACATTCGGAATTCTTTAACACAGTATTCAATCTTATTCAATGC 60
consensus_3372#1      ------------------------------------------------------------
                                                                                  

consensus_3372#0      CAAATACACTGTTGTTCGATATTGTTTCAACGTCATGGTTTTAAATCATTTAAAAGTGTT 120
consensus_3372#1      ------------------------------------------------------------
                                                                                  

consensus_3372#0      CCAATCTCAGGATCACATATAACGCCAACTAAGTCTGGAATTGCCAATCAATCAATCTCA 180
consensus_3372#1      -----------------------------------TGGAATTGTCAATCAATCAATCTCA 25
                                                         ******** ****************

consensus_3372#0      AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 240
consensus_3372#1      AGTCCATCAGGTACACTCACATCTACGCTGCCTAAAACAACATTATTGAATGAAGTAGTG 85
                      ************************************************************

consensus_3372#0      ACAAGTTCACATCCTGTTACTTCAGTAACAATGGAATCATCTGGTTCAGAGACTAGTGGA 300
consensus_3372#1      ACAAGTTCACATCCTGTTACTTCAGTAACAATGAAATCATCTGGTTCAGAGACTAGTGGA 145
                      ********************************* **************************

consensus_3372#0      TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 360
consensus_3372#1      TTAGAATTTCTTTATCTTATACGCCATCTTATTATGTCACTTAGTGTATTAATGGTTCAA 205
                      ************************************************************

consensus_3372#0      TTGCCTATCCTCGGCAAAGCATCTCTAATGACATCTGATGAATTAAAATATCTAA-AAGT 419
consensus_3372#1      TTGCCTATCCTCGGCAAAGCATCTCTAGTGACAGTGAGTTAAATAAATTTTTTTATGAAA 265
                      *************************** *****     * ** **** * * * *  *  

consensus_3372#0      TCATGTTCATCTTACATTTAACAGTCCTAATTTAAATGACAATTCAACTGTATTAACATT 479
consensus_3372#1      TGATATCCGAAATA---TTATGTATACTTATGTATAT-ATGTTATTAGTTCATAAATTTT 321
                      * ** * *    **   ***    * ** ** ** ** *   *   * *  ** **  **

consensus_3372#0      TGGTGTTCTAATTACCTTAGCTAATTCATTAGGAAGTTTATCTTCAAAATTAAGTAGTGT 539
consensus_3372#1      ACGGAACCATCTTATTATAATCATGTTATATTTTACACCTAATTAAGACAAAGATTGTAA 381
                        *    *   ***   **   *  * **     *       ** * *   *  * **  

consensus_3372#0      ATGGAAGTTATGTCAATCTAGTGAATCAGTAGTTGCACAAAAAAAGCGAGAACTCTGTTG 599
consensus_3372#1      GTGTGAATTCTA-CAATTTGTTCGA--ATTCAACGCAATAAAACAAT------------- 425
                       **  * ** *  **** *  *  *  * *    ***  **** *               

consensus_3372#0      TTTGGTTCAACGTGCTTATGAAATGGTTCTGTCGATAATTNTCTCTCAATCTACTAT 656
consensus_3372#1      ---------------------------------------------------------