cluster # 3388

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Schistosoma mansoni
cluster # 3388 cluster # 3388 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3388#0 length = 335 sequences # 1

consensus_3388#1 length = 209 sequences # 1

consensusID : consensus_3388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCAATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGTATGAATTGATTCAGACGTTGATTTACATGGACTATTTAATTTCGACTTTTGTGTCGTTAGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGGATCCCATGTTGGATCATCTGACCATAAATAGAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTCGTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG]

[+] EMBL CD117247             [AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCAATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGTATGAATTGATTCAGACGTTGATTTACATGGACTATTTAATTTCGACTTTTGTGTCGTTAGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGGATCCCATGTTGGATCATCTGACCATAAATAGAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTCGTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG]




>consensus_3388#0
AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCA
ATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGT
ATGAATTGATTCAGACGTTGATTTACATGGACTATTTAATTTCGACTTTTGTGTCGTTAG
CTTGAATGTACCATTATCAAAACTTGTTCGATTAGGATCCCATGTTGGATCATCTGACCA
TAAATAGAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTCGTATGATCAGT
AAGTTCTAGACCATTTGACATAATATGTTGATCGG

consensusID : consensus_3388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [TCAGTGCGTAATTATCTTATCTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTTGTCCTGCTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGATCTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAAATTTTGTCATCCATGACA]

[+] EMBL AW053286             [TCAGTGCGTAATTATCTTATCTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTTGTCCTGCTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGATCTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAAATTTTGTCATCCATGACA]




>consensus_3388#1
TCAGTGCGTAATTATCTTATCTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAA
CTAACTACTTTCCAGTTGTTGTCCTGCTTTTTATCTCCTAAACCTAATGCATCGTATATC
CTACATGTATTTCATGATCTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCAT
GACATGTATAAATTTTGTCATCCATGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3388#0      AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCA 60
consensus_3388#1      ------------------------------------------------------------
                                                                                  

consensus_3388#0      ATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGT 120
consensus_3388#1      ----------------------------------------TCAGTGCGTAATTATCTTAT 20
                                                               *  **  *  * **  * *

consensus_3388#0      ATGAAT-TGATTCAGACGTTGATTTACATGGACTATTTAATTT-CGACTTTTGTGTCGTT 178
consensus_3388#1      CTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTT 80
                       ***** * ***    *  *  ***   *   *** **** *  * *****   ** ***

consensus_3388#0      AGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGG-ATCCCA----TGTTGGATCAT 233
consensus_3388#1      GTCCTG--CTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGAT 138
                        * **    *   **   * **** *  *  **     **** *    * **  ** **

consensus_3388#0      CTGACCATAAATA----GAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTC 289
consensus_3388#1      CTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAA-ATTTTG 197
                      ***** *  ****     **    *  ****    *** * * **   * ***  **** 

consensus_3388#0      GTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG 335
consensus_3388#1      TCATCCATGACA---------------------------------- 209
                        **       *