These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCAATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGTATGAATTGATTCAGACGTTGATTTACATGGACTATTTAATTTCGACTTTTGTGTCGTTAGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGGATCCCATGTTGGATCATCTGACCATAAATAGAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTCGTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG] [+] EMBL CD117247 [AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCAATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGTATGAATTGATTCAGACGTTGATTTACATGGACTATTTAATTTCGACTTTTGTGTCGTTAGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGGATCCCATGTTGGATCATCTGACCATAAATAGAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTCGTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG] consensusID : consensus_3388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [TCAGTGCGTAATTATCTTATCTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTTGTCCTGCTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGATCTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAAATTTTGTCATCCATGACA] [+] EMBL AW053286 [TCAGTGCGTAATTATCTTATCTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTTGTCCTGCTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGATCTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAAATTTTGTCATCCATGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3388#0 AAAAAGCAGGACAACAACTGGAAAGTAGTAGTTAAGTAGAGTAGAGAAAAGACTGAAGCA 60 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 ATAAAAAACAATATCCGGTTAAAATTCAAGTAGTCGTGTTCCTTTGAATCCTGATTCTGT 120 consensus_3388#1 ----------------------------------------TCAGTGCGTAATTATCTTAT 20 * ** * * ** * * consensus_3388#0 ATGAAT-TGATTCAGACGTTGATTTACATGGACTATTTAATTT-CGACTTTTGTGTCGTT 178 consensus_3388#1 CTGAATATTATTGCTTCACTCTTTTCACTACTCTACTTAACTAACTACTTTCCAGTTGTT 80 ***** * *** * * *** * *** **** * * ***** ** *** consensus_3388#0 AGCTTGAATGTACCATTATCAAAACTTGTTCGATTAGG-ATCCCA----TGTTGGATCAT 233 consensus_3388#1 GTCCTG--CTTTTTATCTCCTAAACCTAATGCATCGTATATCCTACATGTATTTCATGAT 138 * ** * ** * **** * * ** **** * * ** ** ** consensus_3388#0 CTGACCATAAATA----GAGAATGGTCTTGGAGCCAATACCTAACTCTTGTAATGTTTTC 289 consensus_3388#1 CTGACTACTAATATTCTAAGTCCTGAATTGGCAAAAATGCATGACATGTATAA-ATTTTG 197 ***** * **** ** * **** *** * * ** * *** **** consensus_3388#0 GTATGATCAGTAAGTTCTAGACCATTTGACATAATATGTTGATCGG 335 consensus_3388#1 TCATCCATGACA---------------------------------- 209 ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||