cluster # 3396

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Schistosoma mansoni
cluster # 3396 cluster # 3396 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3396#0 length = 379 sequences # 1

consensus_3396#1 length = 224 sequences # 1

consensusID : consensus_3396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [ACGTACAGCACTACCAACGACCACGGTAGTTTTATCACTTAATAGACGATCAATTATTTCAATCAATGTATTCTTCTCAGTTGGATCCAAACTATAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAAGCTTCTTGAATCGCTAAAGTGACAATAGGTAATATAAGTGGACACTGCGAATCGACTGATAAAACACGTAAAGATGAAGCTCGAACTAATCGGTTAGGATCCTTTACTGCTCGTTGAAATGTTGATATCGACAACAAAGCAATATCTTGTTCTTGTTCGGCATAATGAGTTAAAAAAGCATAGACAAGTTTTCGGATCTCAGCATTTTTTGAGACCACATTCTTC]

[+] EMBL CD119743             [ACGTACAGCACTACCAACGACCACGGTAGTTTTATCACTTAATAGACGATCAATTATTTCAATCAATGTATTCTTCTCAGTTGGATCCAAACTATAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAAGCTTCTTGAATCGCTAAAGTGACAATAGGTAATATAAGTGGACACTGCGAATCGACTGATAAAACACGTAAAGATGAAGCTCGAACTAATCGGTTAGGATCCTTTACTGCTCGTTGAAATGTTGATATCGACAACAAAGCAATATCTTGTTCTTGTTCGGCATAATGAGTTAAAAAAGCATAGACAAGTTTTCGGATCTCAGCATTTTTTGAGACCACATTCTTC]




>consensus_3396#0
ACGTACAGCACTACCAACGACCACGGTAGTTTTATCACTTAATAGACGATCAATTATTTC
AATCAATGTATTCTTCTCAGTTGGATCCAAACTATAAACTTTTAAAATGGCATGAGCTGC
AGTTTTACGTACATACGGAGAAAGATCTTTCGAAGCTTCTTGAATCGCTAAAGTGACAAT
AGGTAATATAAGTGGACACTGCGAATCGACTGATAAAACACGTAAAGATGAAGCTCGAAC
TAATCGGTTAGGATCCTTTACTGCTCGTTGAAATGTTGATATCGACAACAAAGCAATATC
TTGTTCTTGTTCGGCATAATGAGTTAAAAAAGCATAGACAAGTTTTCGGATCTCAGCATT
TTTTGAGACCACATTCTTC

consensusID : consensus_3396#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [AAAACAACACTGACACAAGCAGAAGGAATCAACAGAGTGATGATTTAAGATACTGTAAAACATAAAAGCGTTACACAAAATTTTAAAATGTAACTTTCACTTTTTGAATTACTAACCTATAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAAGCTTCTTGAATTGCTAAAGTGACAATAGGTAATATAAGTGGAATG]

[-] EMBL CD119922             [AAAACAACACTGACACAAGCAGAAGGAATCAACAGAGTGATGATTTAAGATACTGTAAAACATAAAAGCGTTACACAAAATTTTAAAATGTAACTTTCACTTTTTGAATTACTAACCTATAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAAGCTTCTTGAATTGCTAAAGTGACAATAGGTAATATAAGTGGAATG]




>consensus_3396#1
AAAACAACACTGACACAAGCAGAAGGAATCAACAGAGTGATGATTTAAGATACTGTAAAA
CATAAAAGCGTTACACAAAATTTTAAAATGTAACTTTCACTTTTTGAATTACTAACCTAT
AAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAAG
CTTCTTGAATTGCTAAAGTGACAATAGGTAATATAAGTGGAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3396#0      ------------ACGTACAGCACTACCAACGACCACGGTAGT--TTTATCACTTAATAGA 46
consensus_3396#1      AAAACAACACTGACACA-AGCAGAAGGAATCAACAGAGTGATGATTTAAGATACTGTAAA 59
                                  **  * ****  *  **  * **  **  *  ****  *     ** *

consensus_3396#0      CGATCAA----TTATTTCAATC-----AATGTATTCTTCTCAGTTGGAT---CCAAACTA 94
consensus_3396#1      ACATAAAAGCGTTACACAAAATTTTAAAATGTAACTTTCACTTTTTGAATTACTAACCTA 119
                        ** **    ***    **       ******   *** *  ** **    * ** ***

consensus_3396#0      TAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAA 154
consensus_3396#1      TAAACTTTTAAAATGGCATGAGCTGCAGTTTTACGTACATACGGAGAAAGATCTTTCGAA 179
                      ************************************************************

consensus_3396#0      GCTTCTTGAATCGCTAAAGTGACAATAGGTAATATAAGTGGACACTGCGAATCGACTGAT 214
consensus_3396#1      GCTTCTTGAATTGCTAAAGTGACAATAGGTAATATAAGTGGAATG--------------- 224
                      *********** ******************************                  

consensus_3396#0      AAAACACGTAAAGATGAAGCTCGAACTAATCGGTTAGGATCCTTTACTGCTCGTTGAAAT 274
consensus_3396#1      ------------------------------------------------------------
                                                                                  

consensus_3396#0      GTTGATATCGACAACAAAGCAATATCTTGTTCTTGTTCGGCATAATGAGTTAAAAAAGCA 334
consensus_3396#1      ------------------------------------------------------------
                                                                                  

consensus_3396#0      TAGACAAGTTTTCGGATCTCAGCATTTTTTGAGACCACATTCTTC 379
consensus_3396#1      ---------------------------------------------