These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_34#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence [AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAATTGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGTTCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAATATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTAAATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGACCCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTATAGAATCCGTCATCCGCACGTGCTTCTTATCCCGATCTGCCGAACTGATAAAAAATACACGTGGATGCGATCGCTATCACTACTGAGCTATCAATAGCGGTATGGTCACCACAATTAGTGAGCATATGGGATATGAGTCAGAATTGCTCAATGCCGAAATATTATCGATGCTGAAATGAGACTCTATCTGATACCTACTTNTTTGATGACGACATTCATGCTTAGNTTACAGGATATTTCTGATGGAAT] [+] EMBL CD079899 [AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAATTGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGTTCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAATATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTAAATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGACCCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTATAGAATCCGTCATCCGCACGTGCTTCTTATCCCGATCTGCCGAACTGATAAAAAATACACGTGGATGCGATCGCTATCACTACTGAGCTATCAATAGCGGTATGGTCACCACAATTAGTGAGCATATGGGATATGAGTCAGAATTGCTCAATGCCGAAATATTATCGATGCTGAAATGAGACTCTATCTGATACCTACTTNTTTGATGACGACATTCATGCTTAGNTTACAGGATATTTCTGATGGAAT] consensusID : consensus_34#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGTCATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTGGATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCAAATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAATCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGTAATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTTGATAATAAACGAG] [-] EMBL CD074096 [GACAAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAACTTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGCATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAAAAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACATACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGTCATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTGGATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCAAATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAATCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGTAATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTTGATAATAAACGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_34#0 AGTAATTAGACAGTTTAACTTTTTCATGTTTCTGAAGATTCTGACTCTAACACTTCCAAT 60 consensus_34#1 ------------------------------------------------------------ consensus_34#0 TGTGAACTAGCTATTTAAGTACCGAAAGGATTGTATCCACGATGTGACAGTGACTCCAGT 120 consensus_34#1 ------------------------------------------------------------ consensus_34#0 TCCAGTGGGTCAATGCATTTACCCAATGTTGGTAGAGTACATTGGAGTTTTTTTTAACAA 180 consensus_34#1 ------------------------------------------------------------ consensus_34#0 TATTTTAACTTTATTCTGAGTCTACTAGTAAACAAACATGTTTATGGAAGATTTTTAGTA 240 consensus_34#1 ------------------------------------------------------------ consensus_34#0 AATATTTTAACAAATCAGGATCCAATCATGTTCACCGGGACGGTTCAAATGAACATGGAC 300 consensus_34#1 ------------------------------------------------------------ consensus_34#0 CCTTTGGGTGAGAAAACAGATGAAGCGATTTGGAAGGCCTTGGAGAGTGTACAGATGGAC 360 consensus_34#1 ---------------------------------------------------------GAC 3 *** consensus_34#0 AAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAAC 420 consensus_34#1 AAGACAGTTATAAATCTCGGTCATGGGTTAGATTCGTTAATCAGTGAAGGGGGTTCTAAC 63 ************************************************************ consensus_34#0 TTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTCTAGGTGGAAGCCGC 480 consensus_34#1 TTAAGTATTGGACAGAGACAATTGTTGGCATTATCTCGAACGATTTTAGGTGGAAGCCGC 123 ********************************************* ************** consensus_34#0 ATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAA 540 consensus_34#1 ATATTGGTGGTAGATGAAGTGACATACAACGTTGATCCGAGTACTGATTTCATCATTCAA 183 ************************************************************ consensus_34#0 AAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACAT 600 consensus_34#1 AAAACTCTCAAGAGCATTTTCAAAGACTTTACAGTTTTAACTGTTGCACACAGACTACAT 243 ************************************************************ consensus_34#0 ACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTA-TAGAATCCG-T 658 consensus_34#1 ACCGTGATAGATAATGAAATGATAGTGGTTATGGAGAGTGGCGAAGTAATAGAATCCGGT 303 ************************************************ ********* * consensus_34#0 CATCCGCACGTGCTTCTTA-TCCCGATCT-GCCGA-ACTGATAAAAAATAC----ACGTG 711 consensus_34#1 CATCCGCACGTGCTTTTTAATCCCGATCTTGCCGAGACTGATAAAAAGAATTACAACGTG 363 *************** *** ********* ***** *********** * ***** consensus_34#0 GATGC-GATCGCT-ATCA-CTACTGA-GCTATC--AATA-GCGGTA-TGGTC----ACCA 759 consensus_34#1 GATGCAGATCGCTTATCAACTACTGATGCTATTCAAATAAGCGGTAATGGTCCACCAGCA 423 ***** ******* **** ******* ***** **** ****** ***** * ** consensus_34#0 CAATTAGTGAGC--ATATGGG-ATAT-GAGTC-AGAATT---GCTCAA----TGCCGAAA 807 consensus_34#1 AATTTAGTGAAGCAATATGGGGATATTGAGTCCAGAAATTTGGCTCAGATAGCACGAAAA 483 * ******* ******* **** ***** **** * ***** * *** consensus_34#0 TA--TTATCGA--TGCTGAAA--TGAG-ACTCTATCTGATACCTACTTN---TTTGATGA 857 consensus_34#1 TCATTTATCGAAATGCTGAAAAATGAGGACTCTATTCTGTAATTACCTTACCTTTTTTGT 543 * ******* ******** **** ******* ** *** * *** ** consensus_34#0 CGACATTCATGCTTAGNTTACAGG---ATATTTC-TGATGGAAT---------------- 897 consensus_34#1 AATTGTACAGACCAATTTCATAGCTCTATGTTTTACGATGTGATTATTTTTCTATGATTT 603 * ** * * * * ** ** *** **** ** consensus_34#0 ------------- consensus_34#1 GATAATAAACGAG 616 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||