These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTTAGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACATTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGTGATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCACCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACGAAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCCAGACATTATCTCTCGGAGTTTCGATATATATTGTAGAACATCCAAGTCATCAAAACTTACTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTGTCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAATGTCTTGTAGAT] [+] EMBL AI975673 [CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTTAGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACATTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGTGATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCACCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACGAAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCCAGACATTATCTCTCGGAGTTTCGATATATATTGTAGAACATCCAAGTCATCAAAACTTACTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTGTCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAATGTCTTGTAGAT] consensusID : consensus_3401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [TGTTCACGTAGTCGAACTCATTTTCTTCAATGAAATTGTTTTCTACTTTATCAAACGTTATCAATTATATTTAACTGTTATATCCTTTAATGCATGATTTTTAAATATCATAAACGCTCTAGAAATTATGCAGCACTTATGACCAAATATCAGCGTAGAAATACTTTACACTTACTCATGACGTTTAAATACAACAACTATTACATGGAAGTCACGCATCACAACCTGAACACTAGA] [+] EMBL CD167397 [TGTTCACGTAGTCGAACTCATTTTCTTCAATGAAATTGTTTTCTACTTTATCAAACGTTATCAATTATATTTAACTGTTATATCCTTTAATGCATGATTTTTAAATATCATAAACGCTCTAGAAATTATGCAGCACTTATGACCAAATATCAGCGTAGAAATACTTTACACTTACTCATGACGTTTAAATACAACAACTATTACATGGAAGTCACGCATCACAACCTGAACACTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3401#0 CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTT 60 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 AGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACA 120 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 TTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGT 180 consensus_3401#1 ------------------------------------------------------------ consensus_3401#0 GATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCA 240 consensus_3401#1 -----------------------------------------------------TGTTC-A 6 ***** * consensus_3401#0 CCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACG 300 consensus_3401#1 CGTAGTCGAACTCATTTTCTTCAATGAAATT---GTTTTCTACTTTATCAAACGT-TATC 62 * * * ** **** * * * * ** * * ** ** * ** consensus_3401#0 AAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCC- 359 consensus_3401#1 AATTATATTTA-ACTGTTATATCCTTTAATGCA-TGATTTTTAAATATCATAAACGCTCT 120 ** ** *** ** * * * ** * * ** * *** * ** ** * * consensus_3401#0 AGACATTATCTCTCGGAGTTTCGAT-ATATATTGTAGAACATCCAAGTCATCAAAACTTA 418 consensus_3401#1 AGAAATTATGC--AGCACTTATGACCAAATATC----AGCGTAGAAATACTTTACACTTA 174 *** ***** * * ** ** * **** * * * ** * * * ***** consensus_3401#0 CTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTG 478 consensus_3401#1 CTCATGAC-GTTTAAATACAACA-----ACTATTACATGGAAGTCACGCATCACAACCTG 228 *** * ** ********* * * * *** ** * * *** **** consensus_3401#0 TCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAA 538 consensus_3401#1 A-ACACTAGA-------------------------------------------------- 237 **** * consensus_3401#0 TGTCTTGTAGAT 550 consensus_3401#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||