cluster # 3412

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Schistosoma mansoni
cluster # 3412 cluster # 3412 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3412#0 length = 432 sequences # 1

consensus_3412#1 length = 357 sequences # 1

consensusID : consensus_3412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAACAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAAATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCATATCAATGAGATTGCAGCTGATCAAACATCAGATATGTTATCTAATTGTTATAATCATCATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGATCATCAAATATCGGAATCTGTTGAACAAAAAACTTCTAATACTACTACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCACAAATTATGGCTCAATGG]

[+] EMBL CD191663             [GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAACAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAAATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCATATCAATGAGATTGCAGCTGATCAAACATCAGATATGTTATCTAATTGTTATAATCATCATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGATCATCAAATATCGGAATCTGTTGAACAAAAAACTTCTAATACTACTACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCACAAATTATGGCTCAATGG]




>consensus_3412#0
GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAA
CAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAA
ATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCAT
ATCAATGAGATTGCAGCTGATCAAACATCAGATATGTTATCTAATTGTTATAATCATCAT
TTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGATCAT
CAAATATCGGAATCTGTTGAACAAAAAACTTCTAATACTACTACTACTACTACAGTAACA
TCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCACAAATT
ATGGCTCAATGG

consensusID : consensus_3412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [ATNCGGTAATCTGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTTAATCACAAATTATGGCTCAATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTGGGTCTTCATCAAATGATAATTCAAGGCAGAAATTATTTTGTTTACCCACTTTAATATGTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACATCTCGATCATCCTCCGTTCTTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAATACTAATA]

[+] EMBL CD126269             [ATNCGGTAATCTGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTTAATCACAAATTATGGCTCAATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTGGGTCTTCATCAAATGATAATTCAAGGCAGAAATTATTTTGTTTACCCACTTTAATATGTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACATCTCGATCATCCTCCGTTCTTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAATACTAATA]




>consensus_3412#1
ATNCGGTAATCTGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACAT
CAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTTAATCACAAATTATGGCTC
AATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTGGGTCTT
CATCAAATGATAATTCAAGGCAGAAATTATTTTGTTTACCCACTTTAATATGTTTGCCGT
ATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACATCTCGATCAT
CCTCCGTTCTTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAATACTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3412#0      GATGATGGTGATGATGACGATGATGATGATGAGGAGGAGGTGGAGGGGGATTCTACGAAA 60
consensus_3412#1      -------------------------------------------------ATNCGGTAATC 11
                                                                       ** *    *  

consensus_3412#0      CAACAACCCAATGAACTTATTAATAATGGTATTAATGAAGAAACCATTTGTACAAATAAA 120
consensus_3412#1      TGTGTGAACAAAAAATCTTCTAATACTACTACTACAGTAACATCAACAT---CAAATCAA 68
                              ***  **  *  ***** *  ** **  * *  * * *  *   ***** **

consensus_3412#0      ATATCTCTTGTAGACAATGAATGCACACAAATGATTTCTTCAATGAATAATGATACTCAT 180
consensus_3412#1      TCATATCGTTTAGTTTGTTTATCTG-------GTTCAGTTTAATCACAAATTATGGCTCA 121
                        ** ** * ***    *  **          * *   ** *** *  *** **      

consensus_3412#0      ATCAATGAGATTGCAGCTGATCAAACAT---CAGATATGTTATCTAATTGTTATAATCAT 237
consensus_3412#1      ATGGCAAATATTTCAACGTGTTAAAAATTTACATAAACGTCAGATGACCACTG-GGTCTT 180
                      **     * *** ** *   * *** **   ** * * ** *  * *    *    ** *

consensus_3412#0      CATTTAGTGAAAAGTTCTTCAATACATTCAGATTGTACAGTTGTTGAAAAAATGCCAGAT 297
consensus_3412#1      CATCAAATGATAA----TTCAAGGCAG--AAATTAT---TTTGTTTACCCACTTTAATAT 231
                      ***  * *** **    *****  **   * *** *    ***** *   * *   * **

consensus_3412#0      CATCAA-ATATCGGAATCTGTTG-AACAAAAAACTTCTAATACTACTACTACTACTACAG 355
consensus_3412#1      GTTTGCCGTATCGATTTCTCTGGTGGCTTACAACTCATAATCCTGGATTCATAGAAACAT 291
                        *     *****   *** * *   *  * ****  **** **      *     *** 

consensus_3412#0      TAACATCAACATCAAATCAATCATATCGTTTAGTTTGTTTATCTGGTTCAGTTCAATCAC 415
consensus_3412#1      CTCGATCATCCTCCGTTC--TTACATCAACTGTCTTCTCAAAGTTCGATGACTCTGGTAA 349
                          **** * **   **  * * ***   *   ** *  *  *        **    * 

consensus_3412#0      AAATTATGGCTCAATGG 432
consensus_3412#1      TACTAATA--------- 357
                       * * **