cluster # 342

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Schistosoma mansoni
cluster # 342 cluster # 342 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_342#0 length = 607 sequences # 1

consensus_342#1 length = 208 sequences # 1

consensusID : consensus_342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [TCTCTCAGCTGATTATTCACCGTCATGACTTTTATCATACAGGAAAAAACTACGATCACGAAAAGTAGTACTGATTAGAAGATATTTTATAGAAATTATAAGCAACAAAATAATAAGAACTATGTACATATCCTTGAAAGTCATTGAAAACTACTGAGTCTTTCAAAGTTCTCTATTTTACATATAGATATACATCACTTTATACTATAAAGTGAATGATCAAGATAACTTTGAAATTATAAAATCAGAAAACTTAAAGATGATAGCTAAAAGTGTATGGAATGAATTCGGTAGATATTTTGCTGTTATATCCCGAAGAGAATTGTGGGTGGTGCCTTTTGGATCAATACCATGTGTGTATTTTTTTATCATATAATTGTTAAGTAACTAAACTATTCATATTCATGTTCCTTTTATTATGAGCTTTATTTTGACCTATGAAGTAATATTATACGATTTACCATTCTTGAGTTATGCCCTGTCTACCAAATAGTATATCCCTTATTCACAGCCACATTTGGCTGAATCTTGATAAATGTTATTTTCTATTTTATGGTACGATGTGGTCTGTCTGGTTGGTATATAAACTCAGTATGTTTGAAATATA]

[+] EMBL CD133423             [TCTCTCAGCTGATTATTCACCGTCATGACTTTTATCATACAGGAAAAAACTACGATCACGAAAAGTAGTACTGATTAGAAGATATTTTATAGAAATTATAAGCAACAAAATAATAAGAACTATGTACATATCCTTGAAAGTCATTGAAAACTACTGAGTCTTTCAAAGTTCTCTATTTTACATATAGATATACATCACTTTATACTATAAAGTGAATGATCAAGATAACTTTGAAATTATAAAATCAGAAAACTTAAAGATGATAGCTAAAAGTGTATGGAATGAATTCGGTAGATATTTTGCTGTTATATCCCGAAGAGAATTGTGGGTGGTGCCTTTTGGATCAATACCATGTGTGTATTTTTTTATCATATAATTGTTAAGTAACTAAACTATTCATATTCATGTTCCTTTTATTATGAGCTTTATTTTGACCTATGAAGTAATATTATACGATTTACCATTCTTGAGTTATGCCCTGTCTACCAAATAGTATATCCCTTATTCACAGCCACATTTGGCTGAATCTTGATAAATGTTATTTTCTATTTTATGGTACGATGTGGTCTGTCTGGTTGGTATATAAACTCAGTATGTTTGAAATATA]




>consensus_342#0
TCTCTCAGCTGATTATTCACCGTCATGACTTTTATCATACAGGAAAAAACTACGATCACG
AAAAGTAGTACTGATTAGAAGATATTTTATAGAAATTATAAGCAACAAAATAATAAGAAC
TATGTACATATCCTTGAAAGTCATTGAAAACTACTGAGTCTTTCAAAGTTCTCTATTTTA
CATATAGATATACATCACTTTATACTATAAAGTGAATGATCAAGATAACTTTGAAATTAT
AAAATCAGAAAACTTAAAGATGATAGCTAAAAGTGTATGGAATGAATTCGGTAGATATTT
TGCTGTTATATCCCGAAGAGAATTGTGGGTGGTGCCTTTTGGATCAATACCATGTGTGTA
TTTTTTTATCATATAATTGTTAAGTAACTAAACTATTCATATTCATGTTCCTTTTATTAT
GAGCTTTATTTTGACCTATGAAGTAATATTATACGATTTACCATTCTTGAGTTATGCCCT
GTCTACCAAATAGTATATCCCTTATTCACAGCCACATTTGGCTGAATCTTGATAAATGTT
ATTTTCTATTTTATGGTACGATGTGGTCTGTCTGGTTGGTATATAAACTCAGTATGTTTG
AAATATA

consensusID : consensus_342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [ACACACGGAATCTGTACGAGCAGTCTAGAGCACTTGTTGGTTATGCTATCTGCCTAGCCTAGCCAGTTAAGTCCAGAACTCCAATAACAACATCTGCGGTATGAATCGTTATATTTCAAACATACTGAGTTTATATACCAATCAAACTGATCACATCGTACCATAAAATACAAAATAACATTTGTACAAGATTCAGCTAAATGTGCCT]

[+] EMBL CD189564             [ACACACGGAATCTGTACGAGCAGTCTAGAGCACTTGTTGGTTATGCTATCTGCCTAGCCTAGCCAGTTAAGTCCAGAACTCCAATAACAACATCTGCGGTATGAATCGTTATATTTCAAACATACTGAGTTTATATACCAATCAAACTGATCACATCGTACCATAAAATACAAAATAACATTTGTACAAGATTCAGCTAAATGTGCCT]




>consensus_342#1
ACACACGGAATCTGTACGAGCAGTCTAGAGCACTTGTTGGTTATGCTATCTGCCTAGCCT
AGCCAGTTAAGTCCAGAACTCCAATAACAACATCTGCGGTATGAATCGTTATATTTCAAA
CATACTGAGTTTATATACCAATCAAACTGATCACATCGTACCATAAAATACAAAATAACA
TTTGTACAAGATTCAGCTAAATGTGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_342#0      TCTCTCAGCTGATTATTCACCGTCATGACTTTTATCATACAGGAAAAAACTACGATCACG 60
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      AAAAGTAGTACTGATTAGAAGATATTTTATAGAAATTATAAGCAACAAAATAATAAGAAC 120
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      TATGTACATATCCTTGAAAGTCATTGAAAACTACTGAGTCTTTCAAAGTTCTCTATTTTA 180
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      CATATAGATATACATCACTTTATACTATAAAGTGAATGATCAAGATAACTTTGAAATTAT 240
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      AAAATCAGAAAACTTAAAGATGATAGCTAAAAGTGTATGGAATGAATTCGGTAGATATTT 300
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      TGCTGTTATATCCCGAAGAGAATTGTGGGTGGTGCCTTTTGGATCAATACCATGTGTGTA 360
consensus_342#1      -----------ACACACGGAATCTGTACGAGCAGTCTAGAGCACTTGTTGGTTATGC-TA 48
                                 *  * *  *  ***  * *  * **   * *    *    * **  **

consensus_342#0      TTTTTTTATCATATAATTGTTAAGTAACTAAACTATTCATATTCATGTTCCTTTTATTAT 420
consensus_342#1      TCTGCCTAGCCTA-GCCAGTTAAGT--CCAGAACTCCAATAACAACATCTGCGGTATGAA 105
                     * *   ** * **     *******  * * *      ***   *  *      *** * 

consensus_342#0      GAGCTTTATTTTGACCTATGAAGTAATATTATACGATTTACCATTCTTGAGTTATGCCCT 480
consensus_342#1      TCGTTATATTTCAAAC-ATACTGAGTTTATATACCAATCAAACTGATCACATCGTACCAT 164
                       * * *****  * * **   *   *  ***** * * *   *  *    *  * ** *

consensus_342#0      GTC-TACCAAATAGTATATCCCTTATTCACAGCCACATTTGGCTGAATCTTGATAAATGT 539
consensus_342#1      AAAATACAAAATAACATTTGTACAAGATTCAGCTAAATGTGCCT---------------- 208
                         *** *****  ** *     *    **** * ** ** **                

consensus_342#0      TATTTTCTATTTTATGGTACGATGTGGTCTGTCTGGTTGGTATATAAACTCAGTATGTTT 599
consensus_342#1      ------------------------------------------------------------
                                                                                 

consensus_342#0      GAAATATA 607
consensus_342#1      --------