cluster # 3420

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Schistosoma mansoni
cluster # 3420 cluster # 3420 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3420#0 length = 273 sequences # 1

consensus_3420#1 length = 145 sequences # 1

consensusID : consensus_3420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [TTCAACACCACAATCTTATCCACATGGGAATATGACTAGTGGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGGACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGTCCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGATTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT]

[+] EMBL CD201280             [TTCAACACCACAATCTTATCCACATGGGAATATGACTAGTGGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGGACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGTCCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGATTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT]




>consensus_3420#0
TTCAACACCACAATCTTATCCACATGGGAATATGACTAGTGGACATGTGATATGGGAGTA
TCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGGACAATTCTGTGGATTGATTT
CGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGTCCAAAGCCTGTAGTATTCAT
TCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGATTATTTGGATAATAGAAGTA
ACATTTCGGGAAACATTTTATTTATTTGTCAAT

consensusID : consensus_3420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAATGGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGGACAATTCTGTGGATTGATTTCGGAC]

[+] EMBL CD071800             [CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAATGGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGGACAATTCTGTGGATTGATTTCGGAC]




>consensus_3420#1
CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAAT
GGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGG
ACAATTCTGTGGATTGATTTCGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3420#0      --------------------TTCAACACCACAATCTTATCCACATGGGAATATGACTAGT 40
consensus_3420#1      CCCAAGTGCATAGAATCACATTCGACTCCACACTCTTATCCACATGGGAATATGACTAAT 60
                                          *** ** ***** ************************* *

consensus_3420#0      GGACATGTGATATGGGAGTATCCATATGAAAGATTGAGGTCAACTGCAGATGATGGGAGG 100
consensus_3420#1      GGACATGAGATATGGGAGTATCCATATGAAAGATTGATGTCGACTGCGAATGATGGGAGG 120
                      ******* ***************************** *** *****  ***********

consensus_3420#0      ACAATTCTGTGGATTGATTTCGGACCAGATGGAGAATATGAATTAGATTTACTAGGATGT 160
consensus_3420#1      ACAATTCTGTGGATTGATTTCGGAC----------------------------------- 145
                      *************************                                   

consensus_3420#0      CCAAAGCCTGTAGTATTCATTCTCCACAATATATTATCTGCCAAAGTAACGAGACGTGGA 220
consensus_3420#1      ------------------------------------------------------------
                                                                                  

consensus_3420#0      TTATTTGGATAATAGAAGTAACATTTCGGGAAACATTTTATTTATTTGTCAAT 273
consensus_3420#1      -----------------------------------------------------