cluster # 3434

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Schistosoma mansoni
cluster # 3434 cluster # 3434 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3434#0 length = 438 sequences # 1

consensus_3434#1 length = 358 sequences # 1

consensusID : consensus_3434#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTTTCCTTAGTTTTTTTTCCTATCAATAAAATACAAAGTGATTTTTGTATTATTGAAGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTTAATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTAACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAACCAAAAAAATATACTGTAACCGTGTTA]

[+] EMBL CD198554             [ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTTTCCTTAGTTTTTTTTCCTATCAATAAAATACAAAGTGATTTTTGTATTATTGAAGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTTAATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTAACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAACCAAAAAAATATACTGTAACCGTGTTA]




>consensus_3434#0
ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAAT
ACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAAT
ATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTTT
CCTTAGTTTTTTTTCCTATCAATAAAATACAAAGTGATTTTTGTATTATTGAAGGAAGAG
AATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTTAATGAAAT
TGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTAACAAAATT
GACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAACCAAAAAAA
TATACTGTAACCGTGTTA

consensusID : consensus_3434#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [ATAAATTCATAGGAGGAGGTAAACAATCATAGTCGTATACATTTTACTGACTATCGCAGTGAAATATGTATATTAGAGAAAGGTTGCAGATCATTCTCCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGTTCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGCGTGATGGTATCACACCATCT]

[-] EMBL CD202366             [ATAAATTCATAGGAGGAGGTAAACAATCATAGTCGTATACATTTTACTGACTATCGCAGTGAAATATGTATATTAGAGAAAGGTTGCAGATCATTCTCCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGTTCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGCGTGATGGTATCACACCATCT]




>consensus_3434#1
ATAAATTCATAGGAGGAGGTAAACAATCATAGTCGTATACATTTTACTGACTATCGCAGT
GAAATATGTATATTAGAGAAAGGTTGCAGATCATTCTCCAGCAATCCCTATATCACGCAA
TGCTATATCATCCACAAGTGTAACAACAGGCTACAGTTCCGGTGGAATGACATCAACAAC
AACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATAC
TCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATAT
AAATGAAATCGATCGTGTTGGATCTATGGATAATGAGCGTGATGGTATCACACCATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3434#0      ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAAT 60
consensus_3434#1      ------------------------------------------------------------
                                                                                  

consensus_3434#0      ACTCGATCATGCACTAAACTAGGTGCATTTAAACGATC-TAATCGAACACCAGGAACAAA 119
consensus_3434#1      --------ATAAATTCA--TAGGAGGAGGTAAACAATCATAGTCGTATAC---------A 41
                              **  * * *  **** * *  ***** *** ** *** * **         *

consensus_3434#0      TATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTT 179
consensus_3434#1      TTTTACTGA---CTATCGCAGTGAAA-TATGTATATTAGAGAAAGGTTGCAGATCATTCT 97
                      * * * ***   * ****   ** *  **** *** *   * **  **   ***  ** *

consensus_3434#0      TCCTTAGTTTTTTTTCCTATCAATAAAATACAA------AGTG-ATTTTTGTATTATTGA 232
consensus_3434#1      CCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGT 157
                       *   * *   * *  *   ****   ***  *      **** *         **  * 

consensus_3434#0      AGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTT 292
consensus_3434#1      TCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATC---TCT 214
                             **** *  * *      * * **    *** *    *   * ***     * *

consensus_3434#0      AATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTA 352
consensus_3434#1      GGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGA 274
                        ** *  * *** *  *   **   * *    **        ** * *    **  * *

consensus_3434#0      ACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAAC 412
consensus_3434#1      TCTAATCGAACACCAGG--AACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATA 332
                       * **    *****     **** ** *** * ** **        ** * ** *  *  

consensus_3434#0      CAAAAAAATATACTGTAACCGTGTTA 438
consensus_3434#1      ATGAGCGTGATGGTATCACACCATCT 358
                         *     **  * * **    *