cluster # 3436

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Schistosoma mansoni
cluster # 3436 cluster # 3436 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3436#0 length = 417 sequences # 1

consensus_3436#1 length = 230 sequences # 1

consensusID : consensus_3436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TGTTTTTAGGAAGTGTGTGGGAGCTTGTTACATCTATGATTGAAGAGGTAATATCATTATTACCATCATTACTGTCTTTGTCAAAGTTTAGATTTGTAACTTTTGATTCTTTGTTCTTTATATAATGCTCAAAACTTTTTCTACAATGATATTTTGATTTTTCTGTTGTTAAACGTACCAAGGATAGTGGTCGAGGTAAAGCGATAGAATTTAAAAGGTGAGGCAGTAGAGTTGATACATTTGAATGCTTTTGATTAACAGGTGTCGATTTTAAAAGCTTTTTAGACTGAAAAACACTGTCTCTTCTGCTAGTATTTAATCGTGAAATATGTTGTTGACCATCATCACTACTAAAGTTCCAGTGCAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAA]

[+] EMBL CD198629             [TGTTTTTAGGAAGTGTGTGGGAGCTTGTTACATCTATGATTGAAGAGGTAATATCATTATTACCATCATTACTGTCTTTGTCAAAGTTTAGATTTGTAACTTTTGATTCTTTGTTCTTTATATAATGCTCAAAACTTTTTCTACAATGATATTTTGATTTTTCTGTTGTTAAACGTACCAAGGATAGTGGTCGAGGTAAAGCGATAGAATTTAAAAGGTGAGGCAGTAGAGTTGATACATTTGAATGCTTTTGATTAACAGGTGTCGATTTTAAAAGCTTTTTAGACTGAAAAACACTGTCTCTTCTGCTAGTATTTAATCGTGAAATATGTTGTTGACCATCATCACTACTAAAGTTCCAGTGCAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAA]




>consensus_3436#0
TGTTTTTAGGAAGTGTGTGGGAGCTTGTTACATCTATGATTGAAGAGGTAATATCATTAT
TACCATCATTACTGTCTTTGTCAAAGTTTAGATTTGTAACTTTTGATTCTTTGTTCTTTA
TATAATGCTCAAAACTTTTTCTACAATGATATTTTGATTTTTCTGTTGTTAAACGTACCA
AGGATAGTGGTCGAGGTAAAGCGATAGAATTTAAAAGGTGAGGCAGTAGAGTTGATACAT
TTGAATGCTTTTGATTAACAGGTGTCGATTTTAAAAGCTTTTTAGACTGAAAAACACTGT
CTCTTCTGCTAGTATTTAATCGTGAAATATGTTGTTGACCATCATCACTACTAAAGTTCC
AGTGCAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAA

consensusID : consensus_3436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [CTATACCTGTNGTGAAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAAGAATTCTATCAAAACGATTTTCATGTGTTTCATCAGTATCAGCATCATTACCAGTACAATTCCAGAACGGTATATTAGTACATAAAATGTGTTTAGATTTCACTTCATCCCATAGTTGTGTGTCGAAATCTATATCGTTTAAAAGTTTTGATCTATCCACTGA]

[+] EMBL CD198564             [CTATACCTGTNGTGAAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAAGAATTCTATCAAAACGATTTTCATGTGTTTCATCAGTATCAGCATCATTACCAGTACAATTCCAGAACGGTATATTAGTACATAAAATGTGTTTAGATTTCACTTCATCCCATAGTTGTGTGTCGAAATCTATATCGTTTAAAAGTTTTGATCTATCCACTGA]




>consensus_3436#1
CTATACCTGTNGTGAAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAA
AGATCAAGAATTCTATCAAAACGATTTTCATGTGTTTCATCAGTATCAGCATCATTACCA
GTACAATTCCAGAACGGTATATTAGTACATAAAATGTGTTTAGATTTCACTTCATCCCAT
AGTTGTGTGTCGAAATCTATATCGTTTAAAAGTTTTGATCTATCCACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3436#0      TGTTTTTAGGAAGTGTGTGGGAGCTTGTTACATCTATGATTGAAGAGGTAATATCATTAT 60
consensus_3436#1      ------------------------------------------------------------
                                                                                  

consensus_3436#0      TACCATCATTACTGTCTTTGTCAAAGTTTAGAT-TTGTAACTTTTGATTCTTTGTTCTTT 119
consensus_3436#1      -----CTATACCTGTNGTGA--AAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCG 53
                             **  ****  *    *** ***  *     *  * *  *    *      *  

consensus_3436#0      ATAT-AATGCTCAAAACTTTTTCTACAATGATATTTTGATTTTTCTGTTGTTAAACGTAC 178
consensus_3436#1      ATACGAAAGATCAAGAATTCTATCAAAACGAT-TTTCATGTGTTTCATCAGTATCAGCAT 112
                      ***  ** * **** * ** *   * ** *** ***    * **   *   **   * * 

consensus_3436#0      CAAGGATAGTGGTCGAGGTAAAGCGATAGAATTTAAAAGGTGAGGCAGTAGAGTTGATAC 238
consensus_3436#1      CATTACCAGTA-CAATTCCAGAACGGTATA--TTAGTACATAAAAT----GTGTT--TAG 163
                      **     ***         * * ** ** *  ***  *  * *       * ***  ** 

consensus_3436#0      ATTTGAATGCTTTTGATTAACAGGTGTCGATTTTAAAAGCTTTTTAGACTGAAAAACACT 298
consensus_3436#1      ATTTCACTTCATCCCATAGTTGTGTGTCGAAATCTATATCGTTT-------AAAAGTTTT 216
                      **** * * * *   **      *******  *  * * * ***       ****    *

consensus_3436#0      GTCTCTTCTGCTAGTATTTAATCGTGAAATATGTTGTTGACCATCATCACTACTAAAGTT 358
consensus_3436#1      GATCTATCCACTGA---------------------------------------------- 230
                      *     **  **                                                

consensus_3436#0      CCAGTGCAAACTTTGAACACCATGGCGTGGGCAAATAAAGATTCGATACGAAAGATCAA 417
consensus_3436#1      -----------------------------------------------------------