cluster # 3445

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Schistosoma mansoni
cluster # 3445 cluster # 3445 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3445#0 length = 411 sequences # 1

consensus_3445#1 length = 240 sequences # 1

consensusID : consensus_3445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [ATGAATCTGTCATATTATGGATCTTGATGAATAGATGCTGTTTAACTATATGAATGAGTTTCTTTTTTGATAGAAGCTTTTTAAACGATTGAAACAATTTTTAACTTGGAAAAATTCATTCATTACTTTGAAGCTTTATATCCTATGTAATTTTGTCATTTTTATACTGTAAATCCTGTACTGAGGACAGCTGATAGATGCGTTTGGACTAGGGACGGGAGTCAAACAAGGCTGTCTACTCTACCACTTCTTCTTTCCTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGGGATGCACGGAATACAATGGACATTTCAGAACTAATTAGGCGATTCCGACTTTGCAGATGACCACGCCGTCCTATCCCATGCACACGAACAAATATGGACGAAGAAAACTAA]

[+] EMBL CD072044             [ATGAATCTGTCATATTATGGATCTTGATGAATAGATGCTGTTTAACTATATGAATGAGTTTCTTTTTTGATAGAAGCTTTTTAAACGATTGAAACAATTTTTAACTTGGAAAAATTCATTCATTACTTTGAAGCTTTATATCCTATGTAATTTTGTCATTTTTATACTGTAAATCCTGTACTGAGGACAGCTGATAGATGCGTTTGGACTAGGGACGGGAGTCAAACAAGGCTGTCTACTCTACCACTTCTTCTTTCCTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGGGATGCACGGAATACAATGGACATTTCAGAACTAATTAGGCGATTCCGACTTTGCAGATGACCACGCCGTCCTATCCCATGCACACGAACAAATATGGACGAAGAAAACTAA]




>consensus_3445#0
ATGAATCTGTCATATTATGGATCTTGATGAATAGATGCTGTTTAACTATATGAATGAGTT
TCTTTTTTGATAGAAGCTTTTTAAACGATTGAAACAATTTTTAACTTGGAAAAATTCATT
CATTACTTTGAAGCTTTATATCCTATGTAATTTTGTCATTTTTATACTGTAAATCCTGTA
CTGAGGACAGCTGATAGATGCGTTTGGACTAGGGACGGGAGTCAAACAAGGCTGTCTACT
CTACCACTTCTTCTTTCCTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGG
GATGCACGGAATACAATGGACATTTCAGAACTAATTAGGCGATTCCGACTTTGCAGATGA
CCACGCCGTCCTATCCCATGCACACGAACAAATATGGACGAAGAAAACTAA

consensusID : consensus_3445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [GACNGTGTGGACAGGAGAACANTTNNTGGAAACTTCGTCAGCACTATGGAGTTCTTTAGAAGATTTTCAGCGTTATCCAGAACTCATACGACGGACTACAATGCATAGTCTTGCGTGGAGTACAGCTGACAGATGCATTTCCAGTAAGGACCGGAATCAGACAAGGCTATCTACTCTCCTTCTTCCTCGTTCTTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGGGAAGC]

[+] EMBL CD137705             [GACNGTGTGGACAGGAGAACANTTNNTGGAAACTTCGTCAGCACTATGGAGTTCTTTAGAAGATTTTCAGCGTTATCCAGAACTCATACGACGGACTACAATGCATAGTCTTGCGTGGAGTACAGCTGACAGATGCATTTCCAGTAAGGACCGGAATCAGACAAGGCTATCTACTCTCCTTCTTCCTCGTTCTTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGGGAAGC]




>consensus_3445#1
GACNGTGTGGACAGGAGAACANTTNNTGGAAACTTCGTCAGCACTATGGAGTTCTTTAGA
AGATTTTCAGCGTTATCCAGAACTCATACGACGGACTACAATGCATAGTCTTGCGTGGAG
TACAGCTGACAGATGCATTTCCAGTAAGGACCGGAATCAGACAAGGCTATCTACTCTCCT
TCTTCCTCGTTCTTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGGGGAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3445#0      ATGAATCTGTCATATTATGGATCTTGATGAATAGATGCTGTTTAACTATATGAATGAGTT 60
consensus_3445#1      -------------------------------------------GACNGTGTGGACAGGAG 17
                                                                  **  * ** *   *  

consensus_3445#0      TCTTTTTTGATAGAAGCTTTTTAAACGATTGAAACAATTTTTAACTTGGAAAAATTCATT 120
consensus_3445#1      AACANTTNN-TGGAAACTTCGTCAGCACT--ATGGAGTTCTT----TAGAAGATTTTCAG 70
                           **   * *** ***  * * *  *  *   * ** **    * *** * **    

consensus_3445#0      CATTACTTTGAAGCTTTATATCCTATGTAATTTTGTCATTTTTATACTGTA-AATCCTGT 179
consensus_3445#1      CGTTATCCAGAA--CTCATA--CGACGGA------------CTACAATGCATAGTCTTGC 114
                      * ***    ***   * ***  * * * *             ** * ** * * ** ** 

consensus_3445#0      ACTGAGGACAGCTGATAGATGCGTTTGGACTAGGGACGGGAGTCAAACAAGGCTGTCTAC 239
consensus_3445#1      GTGGAGTACAGCTGACAGATGCATTTCCAGTAAGGACCGGAATCAGACAAGGCTATCTAC 174
                         *** ******** ****** ***  * ** **** *** *** ******** *****

consensus_3445#0      TCTACCACTTCTTCTTTCCTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGG 299
consensus_3445#1      TCTCCTTCTTCCTCGTTCTTCTGGTGATTGACTGGATTATGAAAACCTCGACATCTGAGG 234
                      *** *  **** ** *** *****************************************

consensus_3445#0      GGATGCACGGAATACAATGGACATTTCAGAACTAATTAGGCGATTCCGACTTTGCAGATG 359
consensus_3445#1      GGAAGC------------------------------------------------------ 240
                      *** **                                                      

consensus_3445#0      ACCACGCCGTCCTATCCCATGCACACGAACAAATATGGACGAAGAAAACTAA 411
consensus_3445#1      ----------------------------------------------------