cluster # 348

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Schistosoma mansoni
cluster # 348 cluster # 348 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_348#0 length = 251 sequences # 1

consensus_348#1 length = 127 sequences # 1

consensusID : consensus_348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATATTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACAGCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCAATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAACAGGAAACTCT]

[+] EMBL AI975672             [TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATATTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACAGCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCAATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAACAGGAAACTCT]




>consensus_348#0
TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATA
TTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACA
GCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCA
ATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAA
CAGGAAACTCT

consensusID : consensus_348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [ATGTTGATACGTTTAAAGAATCCACAGAATTTTTACTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATATATAGACATAGCTTTTTATTTCGAGAAATCTG]

[+] EMBL AI740256             [ATGTTGATACGTTTAAAGAATCCACAGAATTTTTACTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATATATAGACATAGCTTTTTATTTCGAGAAATCTG]




>consensus_348#1
ATGTTGATACGTTTAAAGAATCCACAGAATTTTTACTGAGGGTCAGGAAACTCTAAAAGC
CATACATTTTTGCAATGTGTCTTTGTTCATACATATATAGACATAGCTTTTTATTTCGAG
AAATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_348#0      TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATA 60
consensus_348#1      -------------------------ATGTTGATACGTTTAAAGAATCCACAGAATTTTTA 35
                                              *   * **** ** ***  **      **  * **

consensus_348#0      TTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACA 120
consensus_348#1      CTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATA 95
                      ***     * ****   *    *  * * *       *** *****   * ** * * *

consensus_348#0      GCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCA 180
consensus_348#1      -TATAGAC--ATAGCTTTTTATTTCGAGAAATCTG------------------------- 127
                       *  ***  * **        *   **  **                            

consensus_348#0      ATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAA 240
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      CAGGAAACTCT 251
consensus_348#1      -----------